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I already solved problem #17 about UniRef30 database.
(by changing folder name UniRef30 into uniclust and changing UniRef30_2021_06 into UniRef30_2020_06 in make_msa.sh)
However, I got another err…
ILUT1 updated
8 months ago
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Hi,
I just noticed that, in the linux version under the docker, xic folder wasn't generated with --xic argument and found out that the path was set to start with "/" so all xic parquet files gets s…
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Hi,
Excellent work! I am reading ProtSSN and trying to use it, but I have a few questions:
1) The input in downstream tasks is the entire protein, while the training set uses CATH domains. How do…
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I have run the following command:
```
neuralplexer-inference --task=batched_structure_sampling \
--input-receptor /data/NeuralPLexer_pred/protein.pdb \
…
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Hi,
i used a peptide database build by myself to generate a spectral library, however, i found that when i used the library to search, the outcome file is only 1kb with empty information. and i…
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Hello! Hope you are all doing well! For the output alignments (nucleotide.fasta, codon.fasta, and protein.fasta), what gene projections/orthology classes are included here? By that I mean, what does T…
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Hello,
I am working with a large cohort of DIA samples and would like to run DiaNN sample by sample if possible. I was wondering how match between runs works when running DiaNN sample by sample. A…
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Hi,
I got the following error while testing viga using my own viral contigs:
```
...
Detected 8 ORFs in CONTIG_996.fna
Detected 12 ORFs in CONTIG_997.fna
Detected 8 ORFs in CONTIG_998.fna
…
housw updated
5 years ago
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As discussed at the virtual developer meeting, some of the class names within `IdentificationData` could be made clearer/shorter. Based on feedback from the discussion (thanks everyone!), I'd like to …
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We would like to see if the model is simply learning the identity of the protein names. This could be the case if a given protein "A" gives the same feature vector no matter the other protein it is p…