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In the following issue #671 we discussed the major changes for SDRF specification during the next release 1.1. One of them, is the extension of SDRF for metabolomics.
> **GOAL**: The aim of adapti…
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https://www.biostars.org/p/120617/#121342
![](https://files.slack.com/files-pri/T3RF44CD8-F7NLTF2SF/pasted_image_at_2017_10_23_07_44_pm.png)
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what are the predicted clusters of the cell lines? does the subtype change with drug treatment?
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* data formats: accessibility and challenges
* the open Vs. closed source scenario
* common programming languages: founder's effect and influences from the software development field.
* how new stu…
prvst updated
5 years ago
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First copy [this file](https://github.com/PNNL-CompBio/p3/blob/main/functional/calculate-functional-enrichment.Rmd) to this repo. Then we can run the three tests on the protein data (syn25706561) and …
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I just noticed these are under "proteomics" but they would be better under modifications (sorry, I checked this but didn't notice until I went to look at something)
The proteomics link is really …
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There is an API which allows to easily retrieve pre-calculated tags of PubMed papers, with extracted bioconcepts including gene, chemical, disease, mutation and species:
![Screenshot from 2020-06-1…
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**Error when running MaxQuant in Linux**
I am running a set of raw files in Linux with mono and xml files, as it should be run according to official video tutorials, and personal communication with…
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The selection options for
> Where will you submit your data as endpoints?
> 2. What kind of data will you handle:
> 4. Are there any standards that are relevant for you?
are currently (a) somew…
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To do when reviewing proteomics collections. Currently there is not an enforced pattern for [best_protein](https://microbiomedata.github.io/berkeley-schema-fy24/best_protein/) or [all_proteins](https:…
aclum updated
1 month ago