krassowski multi-omics-state-of-the-field issues

krassowski / multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

https://doi.org/10.3389/fgene.2020.610798

MIT License

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Bump scipy from 1.4.1 to 1.10.0 in /setup

#28 dependabot[bot] opened 1 year ago
0
WIP - Faster load of binderhub

#27 sk-sahu opened 3 years ago
0
Make the repository public

#26 vd4mmind closed 3 years ago
1
Update the caption E) in the GitHub ReadMe

#25 vd4mmind closed 3 years ago
1
Add analysis flowchart

#24 krassowski closed 3 years ago
17
Add methods description

#23 krassowski closed 3 years ago
2
Prepare repository for referencing in the manuscript

#22 krassowski closed 3 years ago
3
Revert "Add the overview figure & caption to the README.md"

#21 vd4mmind closed 3 years ago
2
Add R-dependencies with packrat

#20 krassowski closed 3 years ago
2
Add the overview figure & caption to the README.md

#19 krassowski closed 3 years ago
8
Captions and methods description

#18 krassowski closed 3 years ago
28
Use extracted link and semantic features in article typ prediction

#17 krassowski closed 3 years ago
0
Deep learning and neural network articles

#16 krassowski closed 3 years ago
2
Creating the systematic flow diagram for the Omics.ipynb for MS mutiple panel figure

#15 vd4mmind closed 3 years ago
4
multi-omics methods pubished till date (Review article and figure)

#14 vd4mmind closed 3 years ago
4
Create a "strong" subset - with search terms in abstract or title

#13 krassowski opened 4 years ago
1
Normalize the timeline plot against the number of articles published in the journals we consider

#12 krassowski closed 3 years ago
14
Compare the disease term frequency against "background"

#11 krassowski closed 3 years ago
3
Feedback on the omics

#10 krassowski closed 3 years ago
21
Search terms

#9 krassowski closed 4 years ago
3
Search for package and dataset links

#8 krassowski closed 4 years ago
2
Classify into topics "Application of a method", "Introduction of a method"

#7 krassowski closed 4 years ago
7
Screen for code availability statements

#6 krassowski closed 4 years ago
0
Fetch data from DOI registers and Web of Science or similar

#5 krassowski closed 3 years ago
2
Investigate the missing DOIs in 2016

#4 krassowski closed 3 years ago
3
Search terms to exclude

#3 krassowski closed 4 years ago
2
Decide on the article type inclusion/exclusion and grouping

#2 krassowski closed 4 years ago
0
Explore application of BioNLP text mining API from NCBI

#1 krassowski opened 4 years ago
2