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Hi,
I wanted to see the GO terms for both up (log2FC>1) and down regulated genes (log2Fc2). Also my code run perfectly with the downrgulated genes and with the upregulated gene I can get the results …
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I still get the foloowing error with the newest TCGAbioloinks version:
Error in GDCprepare(query = query.exp.hg38, directory = "~/R-codes/") :
I couldn't find all the files from the query. Please …
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https://mp.weixin.qq.com/s?__biz=MzI5NjUyNzkxMg==&mid=2247484442&idx=1&sn=016b12d91af43e16ac8731ccd154b4b2&chksm=ec43b55ddb343c4be1fb6f5f764a421889b8ba93e5784f4921a6f510ee3572c72d14c76059ae#rd
ixxmu updated
2 years ago
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```
library(ReactomePA)
y
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I'm using ClusterProfiler for expression comparation between two groups, using NOISEQ rank (related to Log2FC, same direction).
When using GSEA:
library(ReactomePA)
```
kk2
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Hi,
Having an issue getting the pipeline to run on OS X using the sample data and Docker. Always stops at:
*** [01:42:34] filter_network_expressed_genes.R is running... ***
WARNING: One of the…
whbio updated
3 years ago
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https://mp.weixin.qq.com/s/t0ZrkPX9yz6vaHouY33Ohg
ixxmu updated
2 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/chrarnold/GRaNIE
Confirm the following by editing…
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https://mp.weixin.qq.com/s/IvIkBbvjj9I3ocg9yG-xeA
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/87xT9sZEL5OrYZAsLx3dRw
ixxmu updated
2 years ago