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After looking in the workdir, it appears the file **t2w-image.nii.gz** is not the same as the original T2 which was used as input to the pipeline.
![image](https://user-images.githubusercontent.com/2…
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I'm having a problem with msm in ciftify_recon_all that I think has to do with an issue with loading the msm configuration file. I have double-checked that the msm binary is at the front of my path bu…
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**Is your feature request related to a problem? Please describe.**
While using feroxbuster in an automated way, being able to pause it with `SIGUSR1` or `SIGHUP` would be way more useful than ability…
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Hi,
I didn't get the reason why RepeatModeler2 prefers to keep TE families predicted by LTRharvest/LTR_retriever over RepeatScout/RECON predictions. Say, I have the following cluster in my clstr file…
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## Summary
We were trying to use the `mrtrix_multishell_msmt_pyafq_tractometry` recon specification on our local computing cluster and we are getting network connection errors (see below). The comput…
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Hi,
Thank you very much again for providing such a useful sequence.
We are working on a 3T Prisma with Syngo VE11C and using the R017 version of the C2P.
I just start to play with the option "F…
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**Describe the bug**
I just set this project up, but the installation instructions were incomplete.
I'm not sure if this should go in the AutoRecon or the AutoDecomp docs, so I figured I'd make an i…
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### Description
hello. would you please say how i can download smri version of abide data? as far as i know fmri data from ABIDE is mainly used by researchers.
### Discussion
_No response_
### Mot…
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**Describe the bug**
Hierarchical Forecasting does not work with reconciler (possibly due to empty X dataframe)
**To Reproduce**
Modified from pydata Berlin notebooks. Complete code & data [her…
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### What happened?
We are running fmriprep within docker for our own subject database (rs-fMRI, T1, T2). The laptop I'm using has M3 chip, 32GB memory, and 12 cores. Some of the subjects pass succes…