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Dear,
In order to validate `snp-sites`in our lab we have compared the results with [msa2vcf.jar](http://lindenb.github.io/jvarkit/MsaToVcf.html)
Thus we have took two close sequences from ncbi (…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1856
In the new usher update it moves most of the previous KP.3.1.3 seqs to KP.3.1+G25644T+S:S31F branch. This shall be the cor…
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Stanford AIM Lab (part of Stanford University) has done initial testing on heat treatment to deactivate SARS-CoV-2 (COVID-19) - the virus is completely deactivated at only moderate temperatures (e.g. …
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From:
https://covid19.bioreproducibility.org/
Some key pieces would be:
- structure determination method (homology models would be from different source)
- species
- major ligand
- structural …
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**Name of the dataset**
Reactome SARS-CoV-2
**Mapping or relevant fields**
Minimal: gene product to pathway
Future: GO-CAM granular representation
see also
https://github.com/geneontolog…
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### A summary and discussion of the 19F NMR fragment screen approach towards the SARS-CoV-2 helicase, Nsp13.
### Current Objectives as of 11th March 2024:
**@TomkUCL:**
- [x] 1. Synthesis…
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At the [Biohackathon](https://github.com/virtual-biohackathons/covid-19-bh20), I noticed @bmeldal offering advice on UX issues, and since we have [a good number of these](https://github.com/fnielsen/s…
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On opening Data Dashboard for HTAN BU project get a disconnect within a few seconds
```
2022-11-29T10:15:13.294523+00:00 shinyapps[5806160]: WARNING: [2022-11-29 10:15:13] root - For the attribut…
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**Describe the bug**
The findall regex either changed in newer versions of Python or this has always been incorrect:
https://github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/blob/f3b93dd3972b137…
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Hello! This item:
`SARS-CoV-2 ORF1ab region, respiratory specimen (LOINC:94559-2)`
is a "qualitative" test. To be consistent with the other qualitative tests, maybe we should include that indicato…