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Hi - I am building models using the universal model (accessed here: http://bigg.ucsd.edu/data_access as universal_model.json) but cannot write the universal model as an SBML file using CobraPy's write…
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I was going through the model in cobrapy and doing some sensibility checked.
And I noted their were 1161 unique uniprot identifers, but 1162 unique gene ids.
So i went looking closer to see what was…
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I tried to upload the attached valid SBML file with cy3sbml in Cytoscape 3.7.2. and got the following parsing error
```
Task (org.cy3sbml.SBMLReaderTask@698f9f49) title: cy3sbml reader
Task (…
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The SBML models for plant species provided on the website contain duplicated IDs which makes them fail SBML validation.
This is a redirect from: https://github.com/opencobra/cobrapy/issues/1235 whi…
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Importing `libsedml` in python overwrites the SBMLDocument.getModel functionality in `libsbml`, so that the libsbml model cannot be accessed any more.
See the attached example code (Ubuntu, x64, libs…
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Refer to #292 to implement design. Essentially, if the user wants to edit and associate SBML model that was generated from VPR model generation, dissociate the annotated model by making a copy of the …
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Hello,
I wanted to try to use MetDraw on the webserver with the sample model that you deliver and with my own sbml model but in both cases I get following error:
500 Error: ENOENT, no such file or di…
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Hi,
I've got a parsed sbml model that includes all of my submodels. I then join all of the sub graphs but don't link any metabolites. I would like to save it as a sammi model so that I can come back…
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Hello, I am trying to create a model of Macaca Mulatta (mmul) using MetaDraft. I have the `.faa` file for mmul, along with a Homo Sapien `.gbff` file and an SBML file (Recon3D from the BiGG database).…
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I would like to list the SBML Report we developed
https://sbml4humans.de
on the webpage.
Not sure what others think about this, but I find this a very useful tool to get a quick overview over the …