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Hi Gabor:
The script that I have written takes an excel file that contains results from RNA sequencing (MARS seq) that compares two groups:
1. WT_PyMT: No.I and WT.sc
2. NSD1-KO: KO.2 and KO.3
…
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Hi, thank you very much for Moscot and Cellrank resources! I was wondering if you could please advise the best way to get around the "XlaRuntimeError: RESOURCE_EXHAUSTED: Out of memory while trying to…
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Published: https://doi.org/10.1093/nar/gkx681
Preprint: https://doi.org/10.1101/129759
> While only recently developed, the ability to profile expression data in single cells (scRNA-Seq) has alr…
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Hi there
I am trying to upload my own countmatrix and sample metadata table using the interactive version of the tool, but it doesn't seem to be reading my input tables correctly. I made my tables …
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Hi ! I got an error when trying to read the Visium h5ad after cell2location
my script is :
```
# Import modules
import os
# silence scanpy that prints a lot of warnings
import warnings
…
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Hi!
Just wanted to quickly confirm if sc.dat is "The cell-by-gene raw count matrix of bulk RNA-seq expression. rownames are bulk cell IDs,
while colnames are gene names/IDs." as mentioned in the t…
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On 23rd April, noticed riboviz error when running new transcriptome annotations for S. cereviseae, new FASTA and GFF files. Was testing with full-size files from Brar et al 2012 (B-Sc_2012).
* vign…
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Hello,
When running runDWLSDeconv, I get the following error
```
Error in enrich_matrix[, ct_spot_k[m]] : subscript out of bounds
In addition: Warning messages:
1: In sparseMatrix(i = indices[…
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**Describe the bug**
When I use code like following with npcs lower than 13 (like 12), it make error
```
adata_harmony=ov.single.batch_correction(adata,batch_key='batch',
…
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https://mp.weixin.qq.com/s/ypXTR4hO2uDe5S-JHJsttQ