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our HPC uses apptainer instead of singularity. is it suppoted?
B. W
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**Describe the bug**
Mamba not detected in snakemake when hybracter is run on the cluster via slurm. hybracterENV installed with miniforge3.
**To Reproduce**
1. conda activate hybracterENV in …
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I want to use my newly assembled bacterial genomes with some reference genomes to generate a phylogeny tree. I found your tool very interesting.
I am using a singularity container to run GToTree i…
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When trying torun the EESSI container with
```
mkdir -p $TMPDIR/{var-lib-cvmfs,var-run-cvmfs,home}
export SINGULARITY_BIND="$TMPDIR/var-run-cvmfs:/var/run/cvmfs,$TMPDIR/var-lib-cvmfs:/var/lib/c…
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It would be a luxury to have a check on buildstock commands dependent on which HPC you are using. That is to say, a command like `buildstock_eagle` will not run if you are logged into Kestrel.
This…
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Hi guys,
We need to install Firedrake on our Azure HPC (typycally with Centos OS)
I have been told that the Spack option is not maintained. The firedrake-install also does not work properly.
I …
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### What's the use case?
We are currently investigating Dagster for the use in scientific and high performance computing (HPC).
Many (shared) HPC platforms use [Singularity](https://github.com/syl…
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Is any plan for shinyproxy to support singularity image? It is a very good container solution for HPC. BTW, shinyproxy might consider support slurm or other HPC job manager to proxy different shiny ap…
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[Singularity is now Apptainer](https://apptainer.org/news/community-announcement-20211130/) but this change isn't reflected in this course at all. For example, the top-level README points to
> htt…