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Hi there,
Neat function to convert gl2colony - thanks! I managed to produce .dat file and get COLONY to run analysis. However, it immediately flagged 'Offspring ID, 4670, not found in the offsprin…
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I have successfully run ./pleio.py with the example data sets. But after that, when I run example.R, errors occurred at" pleioplot(snp, traits, rg_matrix, sumstats, pleioin, pleiores, h2, snp_referenc…
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Hello,
For input files containing only SNPs, do I need to do anything different? Or Do I just put one site per locus as below:
```
4 1
ind1^pop1 A
ind2^pop1 A
ind3^pop2 T
ind4^po…
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#### Description:
I encountered an issue when running the `midas2 merge_snps` command. The process has been running for several days without noticeable progress. The log file seems to show repeated "…
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Hi! I was trying to split multiallelic variants and keep only SNPs in my vcf file when I encountered an error message saying:
```
bcftools norm -m -any chr13.hg38.vcf.gz -Ou |bcftools view --types s…
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Dear. Clive and Tade
I have 2 sumstats file (1 sumstats from plink and 1 downloaded from GWAS catalog). I tried to run bridgePRS using these two sumstats and it ended
AttributeError: 'Sumstats…
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Add support for writing a selection of SNP call data to a plink binary format file. Useful to export data for analysis with tools like ADMIXTURE.
Prototype implementation [here](https://colab.resea…
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Hi CloudHypervisor team,
I'd like to create an issue to track the work of supporting SNP guests on KVM.
The idea was discussed with @likebreath weeks ago; overall we'd like to contribute to Clo…
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I am calling CNVs in tumour ONT long-reads and want to try using spectre
I assume it is preferred to input SNPs from a matched tumour sample rather than germline SNPs? Or would germline SNPs be mor…
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`verify_uvm_endorsements()` checks endorsements against both internal hardcoded roots of trust, and entries in the `public:ccf.gov.nodes.snp.uvm_endorsements` map. Only attestations endorsed collatera…