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fritzsedlazeck
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Spectre
Copy number caller for long read data including SNV utilization
MIT License
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Question regarding min_cnv_length parameter
#39
reshu23
opened
1 month ago
0
Coordinates of CNV position
#38
reshu23
opened
1 month ago
2
Output Bed file description
#37
reshu23
closed
1 month ago
2
Minimum CNV length must be greater then 10000 base pairs
#36
fidibidi
opened
1 month ago
1
No .vcf.gz/.vcf.gz.tbi file generated when no variants are reported
#35
SergeWielhouwer
closed
2 months ago
2
using SNV/SNP file with spectre in tumour samples
#34
eesiribloom
opened
2 months ago
2
No cnv found in teh vcf
#33
pcr876
opened
2 months ago
2
Modernise a bit.
#32
kylematoba
closed
2 months ago
1
KeyError "MT"
#31
sandratra-rab
closed
3 months ago
3
Usage recommendations, confusion about mosdepth example command
#30
SergeWielhouwer
opened
3 months ago
3
KeyError: '2'
#29
pcr876
closed
3 months ago
1
Question regarding the blacklist for specific genome builds
#28
bartcharbon
opened
4 months ago
1
Illegal DP FORMAT field in output
#27
bartcharbon
closed
4 months ago
2
Empty result creates vcf instead of vcf.gz
#26
bartcharbon
closed
4 months ago
1
Big difference between results of qdnaseq and spectre
#25
EugeneKim76
opened
5 months ago
3
RecursionError: maximum recursion depth exceeded in comparison
#24
adbeggs
opened
6 months ago
1
Adaptive sequencing CNV calling
#23
adbeggs
opened
6 months ago
1
About min_cnv_len
#22
EugeneKim76
closed
5 months ago
1
Crash on SNV module
#21
adbeggs
opened
7 months ago
3
Question about QUAL, GQ, FILTER and SVSUPPORT
#20
JakeHagen
closed
7 months ago
8
Skips all het SNV sites because deepvariant uses Number=A for the VAF format field.
#19
JakeHagen
opened
7 months ago
3
Not providing a blacklist leads to stack trace
#18
mp15
closed
7 months ago
2
Empty vcf file produced instead of vcf.gz file
#17
Tintest
closed
6 months ago
6
False positives CNV called for chrX in men
#16
Tintest
closed
6 months ago
0
Error with --population parameter
#15
Tintest
closed
6 months ago
1
Error due to undesirable use of an alternative contig of the reference genome
#14
Tintest
closed
6 months ago
1
CNLOH determination fails
#13
adbeggs
closed
7 months ago
5
CNV plotting fails
#12
adbeggs
closed
7 months ago
0
Spectre needs a blacklist or crashes out
#11
adbeggs
closed
7 months ago
0
RemoveN's
#10
adbeggs
closed
7 months ago
0
Odd behaviour in VCF and BED files - duplicate entries
#9
adbeggs
closed
7 months ago
2
CNV caller min_cnv_len
#8
VICTO160
closed
8 months ago
1
Refactor modules to support installing directly with pip
#7
edawson
closed
5 months ago
0
blacklist question
#6
cmsauer
closed
1 year ago
3
Update README.md
#5
wdecoster
closed
5 months ago
0
Feature Request - tumour-normal calling
#4
adbeggs
opened
1 year ago
2
Spectre error
#3
adbeggs
closed
1 year ago
6
Spectre error with UNK chromosome
#2
tuannguyen8390
closed
1 year ago
1
Core dump issue
#1
adbeggs
closed
1 year ago
8