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- the travis-ci link (links to https://travis-ci.com/sras/elminator which is a 404 for me, on [line 9](https://github.com/sras/elminator/blob/9a1344c531b75fbc6d4e96049fc8514a23fc0032/README.md?plain=1…
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Hello,
I have also been researching the GSE139136 scATAC-seq data recently. However, after downloading the files from SRA and running fastq-dump, I only obtained the paired-end sequencing files SRR…
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Hello Guys,
You're project seems super nice, especially the viz parts that retain lot of my attention, and you seems to do a very great job however i'm struggling to setup the project being on MacOS …
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when I use the command "grabseqs sra -l PRJDB5400", I have some errors.
pigz not found, using gzip
Traceback (most recent call last):
File "/home/tools/anaconda3/bin/grabseqs", line 8, in
s…
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Isn't there a call to `googletag.display(adUnits)` missing?
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The SRA changed how their API works, breaking both [sra-explorer](https://github.com/ewels/sra-explorer) and presumably also Labrador (x-ref https://github.com/ewels/sra-explorer/issues/24#issuecommen…
ewels updated
4 years ago
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To facilitate access to GTEx data to the DCPPC, can the Broad Data Steward team please submit XML to the NCBI Sequence Read Archive (SRA) Sequence Data Delivery Pilot (SDDP) for all GTEx data that is …
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Hi again..
I noticed that the master branch of PEAT (currently 2bb4a509) segfaults on two samples I've tried. Here's an excerpt from a GNU parallel run:
```
/bin/bash: line 1: 129774 Segmentation f…
wwood updated
5 years ago
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Nextflow has a feature, `fromSRA` or SRA channel factory, to enable download of data from the SRA archive:
* blogpost: https://www.nextflow.io/blog/2019/release-19.03.0-edge.html
* documentation: …
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casey was loading [PRJDB4532](https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJDB4532). no biosample is loaded because its not linked to the project in the returned XML.
Maybe we want to be able t…