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Hi, I am trying to run GAPIT using a set of 85k SV for about 350 accessions.
I am using the following to import gapit
`
suppressMessages(source(pipe(paste0("wget -O - --no-check-certificate http:…
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*Issue migrated from trac ticket # 1434*
**component:** Core: Parse Library | **priority:** minor | **resolution:** fixed
#### 2017-09-29 12:57:15: @tneele created the issue
___
For some modal for…
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Hi, awesome project!
Have you thought about using http://ruby-doc.org/stdlib-2.0.0/libdoc/curses/rdoc/Curses.html for rendering? It's much better fit for rendering ascii game graphics on console than…
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Hello,
I am attempting to run Valor on a non-human dataset for which no default Sonic file is available.
I thus followed the guidelines on Sonic's GitHub page and created my own file. I generate…
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Hi, thankyou for the amazing set of tools!
I am calling structural variations using GRIDSS, for that I first used SvPrep, then GRIDSS followed by GRIPSS. Then later, I used files generated by GRIPS…
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Hi,
We would like to have the following new terms:
1) copy neutral loss of heterozygosity (synonym CNLOH)
2) amplification (synonym: AMP)
3) amplification with loss of heterozygosity (synonym: amplif…
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Hypothetical syntax:
```julia
@stencil C[i] = (B[i+1] - B[i-1])
```
Should this create C initialized to 0 and fill only 2:end-1
```julia
@stencil C[i] = (B[i+1] - B[i-1]) compact=true
```
Could …
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0
I have set up an SVAR model with statsmodels.SVARResults. When I attempt to get the variance decomp it throws error or it just returns the memory location. I have tried two ways.
import nump…
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I suggest to [use an augmented assignment statement](https://docs.python.org/3/reference/simple_stmts.html#augmented-assignment-statements "Augmented assignment statements") also at the following plac…
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Top-level tracking issue for reorganising documentation as per @evildmp's recommendations - https://www.youtube.com/watch?v=O__Y7PiTK5A&feature=youtu.be