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Hi
I am using MagetBrain (https://github.com/CobraLab/MAGeTbrain), which uses mincANTS for registration of subcortical atlases to individual subjects. This is done over at scinet nodes. When I do 20 …
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**Title**
The hMRI-toolbox: A toolbox for quantitative MRI and in vivo histology using MRI (hMRI).
**Presentor and Affiliation**
- [Christophe Phillips](https://github.com/ChristophePhillips)…
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**Describe the use case that is addressed by this feature.**
The problem that this feature would solve.
IVSCC is patching in subcortical brain regions where cells are more likely to exhibit sponta…
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**Issue Summary:** I’ve noticed that running the same example multiple times produces different results.
**Environment Details:**
- I installed the code by following the instructions in the reposi…
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Hi, I'm trying to run the following command:
`nnUNetv2_plan_and_preprocess -d 777 --verify_dataset_integrity --verbose --clean `
This is my `dataset.json`:
```bash
{
"channel_names": {
…
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Hello,
when calling
```
aseg2
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According to @faskowit, any atlas (like the one from freesurfer) should work with this App, but if a user feed parcellation input from freesurfer, it will fail with this error message
```
+ singul…
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SusStaIn is a cool idea for extracting models from cross-sectional data, but one idea I have is, if my data is longitudinal, I could constrain the possible progression models that are possible?
Can…
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Dear Kwok,
After running SEPIA for the participants, now I want to corregister the subject Chimap to AHEAD template. So, I used the SEPIA GUI for this but the problem is, it is very slow. I have used…
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Greetings,
I recently found this tool (thanks to a Neurostars answer by @gdevenyi) and have been testing it with a mouse model of neurodegeneration (ex-vivo imaging, 75 microns). I based things on …