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How did you figure out patients' survival information (time to event) from TCGA RNA-seq data? There seems to be no feature indicating survival or censorship.
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When coming from homepage and clicking on Ras/RAF in CRC the remove track button does not work on first try
inodb updated
2 weeks ago
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If I want to analyze the RNAseq data of TCGA, which data should be used? count or tpm or fpkm?
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Really nice work, congrats!
(1) What are your feelings about the generalization capability of MADELEINE (w/o fine-tuning) to another anatomical sites different to breast and kidney? I mean, using M…
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Sumana's use-case (if it's still relevant).
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Hi,
I'm having trouble running CARMA on TCGA segmented data. The segment files have these columns: Sample Chromosome Start End Num_Probes Segment_Mean
If I run the segment files I have this err…
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Hello, the tcga_brca_subset.csv.zip file you provided regarding the grouping information of TCGA BRCA is corrupted. Could you please resend it to me? I am looking forward to your reply.
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Hi,thank for your excellent work. Could you provide manifest information to download WSI form TCGA.From example the required information is "id filename md5 size state
906fef4f-e818-4b0d-9b79-a03b6d…
WxpHB updated
10 months ago
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CCLE, PCAWG, and TCGA we can use the consortium-provided metadata and link it to samples.
For each sample it stores a reference to a metadata file - we already sort of have this, but the problem is…
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Hi,
I am trying to compute survival plots for a specific set of genes expressed in a specific samples in TCGA.
What I am doing is
```
listSamples