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A tour of our [walkthrough notebook](http://nbviewer.ipython.org/github/soft-matter/trackpy-examples/blob/master/notebooks/walkthrough.ipynb) alone could fill 15 minutes. There's no shortage of featur…
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I noted that the C++ code was twice in the repository (in Matching and in PSMN/Matching).
I'd like to avoid this for the Python code. One should be able to install the package so that a command to…
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Hi,
So for drawing trajectories (say t), we generate the final dataframe (say df) (after batch-processing and linking) and plotting the dataframe using tp.plot_traj, which uses a color code for eac…
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- [x] The walkthrough contains a nice overview of PIMS, lifted from the SciPy talk, but a more thorough PIMS tutorial is needed, especially until PIMS gets its own sphinx docs.
- [x] The one regressio…
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The following packages have been incorrectly marked as not being research software:
I hope this is the right place to put this, and isn't a problem listing loads of packages in one issue - these are …
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I order to properly register images, a preprocessing step of either padding or cropping your stack to make may be required
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It would be great if PIMS supported intersphinx:
http://www.sphinx-doc.org/en/master/usage/extensions/intersphinx.html
Then people could more easily link the documentation.
I did not find a h…
moi90 updated
4 years ago
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Hi guys, I have used the sub pixel code as per the walkthrough and have indeed found that there is a dip at the center of the histogram if the diameter setting is too small. That all good, but what I…
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Hello,
We've been trying to "process an unlimited number of frames" but hitting a hiccup with memory usage. Running in a jupyter notebook, the following eventually gobbles up all of the 128GB of our w…
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I am trying to reproduce the streaming example: http://soft-matter.github.io/trackpy/v0.3.0/tutorial/on-disk.html
When I review the test.h5 result here, no particle column is present.
This must b…