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Hi,
It is a fantastic method for analyzing spatial transcriptomics!
In paper, you say "Although the original annotation had 12 reference clusters (Fig. 3A), we set the number of clusters in our …
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This is a list of tutorials that are missing a workflow, if anybody would like to run this tutorial and extract the workflow from their history afterwards and upload it here, this would be a great hel…
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Hello,
I am using human lymph node data from 10x visium spatial transcriptomics data set. Also, I am little new to coding. I was trying to understand the package STdeconvolve using your youtube tut…
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Recently ingested "HDCA project: single cell transcriptomics" has a wrong number of bundles because of incorrect linking (38 instead of 10). It did not trigger any analysis as is
10x 3' v3 sequenci…
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# SummarizedExperiment -> tidy() -> tidybulk! - Tidy transcriptomics
[https://stemangiola.github.io/tidytranscriptomics/post/2021-02-18-new-post/introduction/](https://stemangiola.github.io/tidytra…
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Hi, I am new to programming and this is my first time posting an error like this, so if there is anything I forgot to include or did wrong please let me know.
I am performing a Trinity run which h…
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Your package idea seems very good. Is it possible to apply it to multiple samples as well?
In my data, each sample has its own local x and y coordinates. And I have a merged object.
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Loading the `stitched-full` view in the new spatial transcriptomics project works much better now:
- Loading it from filesystem now takes 127028 ms (~ 2 min), so much better than before.
- Once load…
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Project Title: HDCA project: single cell transcriptomicsProject Short Name: HDCA-Sweden-10xProject UUID: 008e40e8-66ae-43bb-951c-c073a2fa6774Wrangler/s: Zinaida,A,Perova; PI/s: Sten,,Linnarsson; Speci…
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Hi,
i am trying to run Cytospace on spatial transcriptomics on Count matrices encountering the **illegal hardware instruction**.
Iam running cytospace on Macos M3 Max Chip. highly appreciate any…