JinmiaoChenLab GraphST issues

JinmiaoChenLab / GraphST

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no matter cluser or deconvolution you always use the top 3000 genes as the feature.

#41 StackChan opened 1 month ago
0
Error while importing GraphST, No module named 'ot'

#40 niklasbinder closed 3 weeks ago
2
vertical and horizontal integration of multiple tissue slices

#39 huixiaaaa opened 3 months ago
0
Normalization issue on Stereo-seq tutorial

#38 tvegawaichman opened 3 months ago
0
Model Implementation Appears to Differ from Publication

#37 zdanaceau opened 4 months ago
0
where can i get Mouse embryo dataset?

#36 amssljc opened 4 months ago
1
Maximum number of cells tested by GraphST

#35 rocketeer1998 opened 5 months ago
1
specify batch size

#34 jairaj-mathur opened 6 months ago
1
Email address update

#33 longyahui opened 6 months ago
0
take 3D spots position into account

#32 wanghf810501 opened 7 months ago
1
Latent Representation for Silhouette Score to Determine Number of Clusters

#31 Radwaadel267 opened 7 months ago
6
Adaptation for VisiumHD?

#30 Rafael-Silva-Oliveira closed 4 months ago
1
Question for integrating different sources of ST and scRNA-seq data

#29 Fanyu000 opened 8 months ago
2
Can GraphST be applied for merfish?

#28 Byronxy opened 8 months ago
1
Use latent embeddings for clustering

#27 aelhossiny opened 8 months ago
1
TypeError: invalid data type for einsum"

#26 aelhossiny closed 8 months ago
1
No file as scalefactors_json.json

#25 mangochiral opened 8 months ago
2
Question about why the cluster number is set to 22 when clustering the mouse embryo dataset

#24 tqwang743 opened 8 months ago
1
Question with mouse olfactory bulb Stereo-seq data

#23 zhaozhenxing0 opened 8 months ago
2
Does GraphST work on M2 Mac?

#22 dolchan opened 9 months ago
2
why deconvolution for adata_sc?

#21 UnseenAnchor opened 9 months ago
1
How to use mclust as clustering method

#20 ShaowenJ opened 10 months ago
1
The lack of spatial location information in dataset

#19 tqwang743 opened 12 months ago
2
Question about learning the mapping matrix for scRNA-seq and ST data integration(equation 9 and 10 in paper)

#18 UnkownNames opened 12 months ago
1
clustering bug

#17 wdb-web opened 1 year ago
1
Question regarding normalization

#16 tvegawaichman opened 1 year ago
3
Is mclust supposed to be slow?

#15 peterkilfeather closed 1 year ago
0
GraphST with multiple samples, general question

#14 kguion1 opened 1 year ago
3
The reproduction results of the DLPFC dataset are inconsistent with those recorded in the paper

#13 JingofGao opened 1 year ago
0
GraphST for horizontal integration

#12 ciciQ777 opened 1 year ago
2
Question Regarding Distance obsp

#11 tvegawaichman opened 1 year ago
2
Question with horizontal integration

#10 RubyLiu-2 opened 1 year ago
1
Color error in sc.pl.embedding()

#9 Tripfantasy closed 1 year ago
1
issues with installation

#8 JLiLab opened 1 year ago
5
The different results when i tried to cluster DLPFC with GraphST

#7 tqwang743 closed 1 year ago
3
Question for hyperparameters

#6 zy-fang closed 1 year ago
2
Cannot find file scalefactors_json.json when running tutorial 1.

#5 JINJINT closed 2 years ago
2
Create LICENSE

#4 longyahui opened 2 years ago
0
Question for Github Code License

#3 JianingYao opened 2 years ago
1