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Hi,
We have some tools that expect to see allele depths in FORMAT column (ie A,C,G,T or AU,CU,GU,TU) and TIR/TAR for indels. Would be great if there was a way to get these in the vcf output.
Tha…
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Hello,
Thanks for developing this amazing software.
Currently we are analyzing mouse tumor samples in DIANN. In these analysis we get the warning that DIA-NN is using "more than 1000 different i…
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Hey @yashpatel6 ,
I think I am having memory problems:
```
Process `multi_sample_wgs:calculate_contamination_tumour:run_GetPileupSummaries_GATK (1)` terminated with an error exit status (247)
``…
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Hi,
I saw the similar issue #503. As you mentioned it should not present in version 0.9.6, I create this new issue here, thinking it may due to other reasons.
Here how I run CNVKit on a matched …
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Should verify specimen type values with accepted codelist values.
Should verify that submitter specimen id and specimen sample id values are all distinct (never the same value in both columns).
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**Background**:
Different cancers have different mutation burdens. One nice way to visualize them is the so-called hamburger plot. In the figure below as discribed in [this paper](http://www.natur…
jjgao updated
4 years ago
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Hello
In the natural history of tumours, chromosomal arms have been intermingled and not clear like the attached plot
By which argument we can make that readable please?
`palimpsest_plotTumor…
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"tumour" attribute causes things to break
to try it:
```…
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### Current Applications
I've sent out 9 position applications that we picked:
- ASR
- KL
-(x) HM, slow no, apply on April 30th, and get rejection letter on May 15th, no obvious reason but I t…