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Hello developers!
Thanks for this great work.
Due to how Strainy works, I find attractive to try to use it for haplotype assembly of human mitochondrial genome, do you think it might work?
A…
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Hi,
I tried to use MaSuRCA-4.0.5 to assemble a insect genome(~500Mb) on centos 8 system with 512 G Mem. We have 30x Illumina PE reads and 60x pacbio reads. But I encounter error correct PE and Failed…
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a few thoughts on unnecessary duplication of files and/or other space-saving ideas --
* `{catlas_base}/bcalm.{catlas_base}.k{ksize}.unitigs.fa` can be designated as `temporary`- it's only used once…
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While @halexand and I were running spacegraphcats on a group of TARA oceans samples, we encountered a segmentation fault during the `bcalm_cdbg` rule. This error only occurs with the conda package of …
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Hi,
We have run annotate_hits_pyseer to annotate k-mers.,but we are not sure if it has mapping quality when annotating k-mers? Do you have any suggestions?
Thank you in advance!
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Hi,
It's a perfect soft.
When I used it to assemble my data, I could not understand the --read parameter, if I have data like R1_fq.gz, and R2_fq.gz, how to use it?
It can use like Spades. -1, …
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Hello,
I would like to align PacBio HiFi reads to ONT reads with the goal of making a consensus of the alignment against the long read backbone (to correct the errors).
First, I wonder whether Win…
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Hello,
I am running `bcalm` as part of the spacegraph cats pipeline in collaboration with @taylorreiter. The command I am running is: `bcalm -in INFILES -out OUTFILE -kmer-size 31 -abundance-min 1…
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Hi!
I'm a computer engineering student and I'm doing my master thesis on improving UST basically (see [here](https://github.com/enricorox/USTAR) if interested).
I wrote a simple C++ program that e…
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Hello,
We seem to be getting "RuntimeError Usage: Options_minmatch(self,m)" errors in our MaSurca run. Please see brief logs below:
```shell
[Fri Jun 1 09:54:31 BST 2018] Estimated genome size…