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marbl
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Winnowmap
Long read / genome alignment software
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Add -y to help message
#45
pickettbd
closed
2 months ago
1
Seeing multiple primary alignments per read
#44
mwykes
opened
4 months ago
0
Segmentation fault
#43
diego-rt
closed
6 months ago
0
Detect deletion between gene and pseudogenes
#42
keenhl
opened
8 months ago
0
Is there any relevant evaluation for winnowmap2 with RNA-Seq data (like ont, iso-seq)?
#41
shengxinzhuan
opened
8 months ago
1
No -I option
#40
soisa001
opened
10 months ago
7
no SQ lines present in the header
#39
zhangwenda0518
closed
1 year ago
1
how to keep Mm tags in bam
#38
bakeronit
closed
1 year ago
1
Mutilple references
#37
Meghuser
opened
1 year ago
2
Compile issue: error: ‘lrint’ is not a member of ‘std’
#36
Gray-Tu
closed
1 year ago
5
required read length for winnowmap
#35
charliechen912ilovbash
closed
1 year ago
1
Optimising gaps in whole genome assembly alignments
#34
mnshgl0110
opened
1 year ago
2
Try to understand the super long soft/hard clipping in the raw reads mapping
#33
WenyuLiang
opened
1 year ago
0
How to map with pre-built indexes ?
#32
AbhinavDutta
opened
2 years ago
2
Not compiling on MacOS ARM
#31
jianshu93
opened
2 years ago
2
Hard coded OMP threads?
#30
johannesgeibel
opened
2 years ago
2
Segmentation fault when mapping from index
#29
lucblassel
closed
2 years ago
3
Build of meryl fails (sys/sysctl.h missing in gcc 7.5)
#28
giesselmann
closed
2 years ago
4
failed to parse the FASTA/FASTQ record
#27
Gongjiao94
opened
2 years ago
3
PacBio CLR reads
#26
OliverPStuart
opened
2 years ago
1
How to change the mapQ and τ？
#25
wangzhennan14
opened
2 years ago
1
How to change the mapQ and τ？
#24
wangzhennan14
closed
2 years ago
0
aligning HiFi reads to single pass long reads
#23
dcopetti
opened
2 years ago
2
[trivial] releases seem to be tar's, not tar.gz's
#22
SHuang-Broad
opened
2 years ago
1
Further processing after alignment using Winnowmap
#21
dKlee99
closed
2 years ago
1
Way to filter winnowmap2 BAM files for read lengths
#20
Musketeer-D
opened
3 years ago
0
Finding X scaffolds in a genome assembly
#19
desmodus1984
opened
3 years ago
0
Multithreading support?
#18
zhemingfan
opened
3 years ago
2
Winnowmap for read overlapping
#17
shelkmike
opened
3 years ago
2
Is --split-prefix supported?
#16
schorlton
opened
3 years ago
2
uniq kmer anchoring mapping
#15
zhoudreames
closed
2 years ago
2
not compiling on Mac OS
#14
mleysens
closed
3 years ago
3
Mapping setting advice
#13
GuillaumeHolley
closed
3 years ago
4
--secondary=no
#12
zhoudreames
closed
3 years ago
5
Mapping simulated T2T reads
#11
lh3
closed
2 years ago
8
Much more unmapped reads compared to minimap2
#10
yipukangda
opened
3 years ago
0
List of files / multiple files as input
#9
SergejN
opened
3 years ago
5
Mapping using PacBio CCS BAM file
#8
gevro
opened
3 years ago
4
Winnowmappy
#7
marcus1487
opened
3 years ago
1
winnowmap PacBio CCS alignment
#6
sjin09
opened
3 years ago
4
kmer size for meryl
#5
mrvollger
closed
3 years ago
2
equivalent of minimap2 -ax splice -uf -k14 ref.fa direct-rna.fq > aln.sam ?
#4
TommySchooner
closed
3 years ago
2
Using Meryl on MacOS
#3
TommySchooner
closed
3 years ago
9
paftools showing no accurate mappings after Winnowmap?
#2
ekimb
closed
4 years ago
7
Winnowmap takes much long than Minimap2 - is this expected?
#1
jelber2
closed
4 years ago
9