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Should demonstrate ability to parse several VCFs output from several callers
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Hello Nikolaos and Pavlos,
I understand there were issues about Mahattan plots already asked by other ppl. However, I am encoutering something new that others did not mention. I am hoping to get som…
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I am getting the following error while running the test script for CADD 1.7:
```
$ ./CADD.sh -a -g GRCh38 -o ~/tmp/cadd/output_inclAnno_GRCh37.tsv.gz ./test/input.vcf
CADD-v1.7 (c) University of …
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Thank you for creating this pipeline. I've installed all the necessary components and I'm currently attempting a test run to demultiplex a single pool of 10X multiome data, which includes four multipl…
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Hello, @odelaneau ,
Thanks for the great work with shapeit5!!
I'm looking into implementing it in a nextflow pipeline (from modules made by @LouisLeNezet, thanks also to him!).
I have a problem…
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Hello, in *LongPhase* paper, you utilized `minimap2` to align sequences to reference, and then performed variants calling using `PEPPER-WhatsHap-DeepVariant` pipeline. However, to my understanding, wh…
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Hi PGS Catalog team, we love this resource but we wanted to bring to your attention an issue with INDEL harmonization:
My team and I noticed that the ENSEMBL-harmonized coordinates provided for IND…
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Hi, vg is a great software in pangenome.
I have 12 genome and gff files, and already built a graph-based pangenome with SV vcf file by _vg construct_ and _vg index_.
I also have some RNA-seq dat…
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I `git cloned` the Github repository on my HPC but when I tried to do the following installation:
**Command:**
```
devtools::install_github("aschluter/ClinPrior")
```
**Error:**
```
Dow…
yr542 updated
12 minutes ago
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Hello, I have a question concerning phasing using pedigree information :
I have a vcf of 23 individuals, and their respective bam files. They are either full sibs or not related but the parents are …