alachins raisd issues - Githubissues

alachins / raisd

RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors

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problem converting fasta to vcf

#56 thomlmarshall closed 2 months ago
1
Test run fails: Assertion `tstring[0]=='\n'' failed.

#55 MilesLuca opened 3 months ago
1
Question on missing data management

#54 jbruxaux opened 4 months ago
0
New problems in generating Manhattan plot

#53 yixuanyang27 opened 4 months ago
2
Segmentation fault (core dumped) in my test run

#52 jyw-atgithub opened 7 months ago
1
Assertion `RSDDataset->numberOfSamples>=1'

#51 ChrisK1988 opened 7 months ago
2
Can I have multiple alleles in the ALT column?

#50 carolynzy opened 8 months ago
1
using RAiSD with unpolarized data

#49 TinaH10 opened 9 months ago
1
Same input vcf different maf

#48 guidopuccetti opened 9 months ago
1
Compilation issue

#47 glaudelrio opened 11 months ago
1
Does the snp vcf files need a L ( SNP size ) parameter

#46 chichizhao opened 11 months ago
3
Update README.md

#45 Creeki opened 1 year ago
0
Update install-RAiSD-GSL.sh for new gsl

#44 Creeki opened 1 year ago
0
Which vcf to get manhattan plots?

#43 Harper75 opened 1 year ago
8
Cannot get a Manhattan plot

#42 Candce opened 1 year ago
2
All the regions are skipped (VCF input)

#41 shaowei515 opened 1 year ago
1
can't find known selective sweeps

#40 jdaron opened 2 years ago
3
VCF for testing

#39 BJWiley233 opened 2 years ago
2
Input file

#38 furr-rui opened 2 years ago
1
Window size in RAiSD to compare results from SweeD

#37 DuttaAnik opened 2 years ago
4
Results interpretation

#36 glaudelrio opened 2 years ago
10
Can we compare the mu statistic among populations?

#35 ymatmt closed 2 years ago
2
Test run data not available?

#34 fishercera opened 2 years ago
1
About declared error gsl/gsl_errno.h

#33 diegohernansanchez opened 2 years ago
1
ms input fails sporadically

#32 silastittes closed 2 years ago
2
window size, proxy for strength/timing of selection

#31 cistarsa opened 2 years ago
5
Can raisd use indels?

#30 SC-Duan opened 2 years ago
1
test data (wget 139.91.162.50/raisd_data/d1.tar.gz)

#29 peterthorpe5 closed 3 years ago
2
ERROR: unexpected error during parser initialization

#28 Wennie-s opened 3 years ago
1
-X option does not work

#27 ymatmt closed 3 years ago
2
Missing regions in population.

#26 caonetto closed 3 years ago
2
μ_SFS values are consistent along the genome

#25 Huyuxi08 opened 3 years ago
5
Enhancement: bioconda access

#24 noahaus opened 4 years ago
0
RAiSD with SNP array data

#23 vlattko opened 4 years ago
6
ERROR: Invalid character (2) found!

#22 wqy399 opened 4 years ago
2
Question about the threshold in Manhattan plot

#21 foala opened 4 years ago
5
ERROR: unexpected error during parser initialization

#20 foala closed 4 years ago
8
start position and end position is 0 when adding -R parameter

#19 weikai-320722 opened 4 years ago
3
Error Report When running RAiSD

#18 rosehuang24 closed 4 years ago
4
Duplicate windows variable statistic values

#17 silastittes closed 4 years ago
4
introduce mappable sites into calculation

#16 rossibarra opened 4 years ago
5
Most of the sites are discarded

#15 palomo11 closed 4 years ago
1
very high FPR and very low TPR

#14 palomo11 closed 4 years ago
5
Input vcf file

#13 palomo11 closed 4 years ago
2
Manhattan plot not created

#12 TinaH10 closed 4 years ago
27
Var and P-value increasing along chromosome

#11 danjgates closed 4 years ago
4
Analysis of unpolarized data

#10 sergiopalmavera closed 4 years ago
3
Why are monomorphic SNPs removed?

#9 sergiopalmavera closed 4 years ago
3
Different reports after adding the "-R" flag

#8 sergiopalmavera closed 4 years ago
2
How are start and end positions of a window determined?

#7 twooldridge closed 4 years ago
7