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Hi Yuanhua,
For the parameter "-f" in brie, which feature file should I use? The lenient or filtered? Is "-f" parameter optional or must needed?
Thanks,
Gangcai
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Currently, due to the architecture of Mikado, it can happen that loci get lost in scenarios like the following:
- Real loci to find: transcript A, transcript B
- Transcript C spans both loci and s…
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Upon execution of the Mikado Pick, I get some unexpected results.
In the resultant mikado.loci.gff file, I seem to be getting 'superloci' that overlap in genomic coordinates. Surely these should be…
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Hi, Emily,
Thanks for your work on this software. I want to ask several questions about it:
1. Is this python version of QUILTS the same as the server version(http://openslice.fenyolab.org) on …
pl618 updated
6 years ago
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R code for the following:
Download appropriate GTF from AnnotationHub (GRanges)
Filter exons and transcripts - rMATS use only these features of the GTF to detect alternative splicing.
Filter protei…
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Hello,
I tested [this commit](https://github.com/rstudio/pagedown/commit/71631aa30c55cd2b61b3ac34063252b373e557eb) and when I opened the html file on
* Windows 10 Chrome 70.0.3538.110 (Official…
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i.e.
```
invoke
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Hi,
I'm using rMATS v4.0.1 (turbo) for alternative splicing analysis. I want to visualize the output by maser 0.99.16 but encountered the following error.
Error in .Call2("solve_user_SEW0", star…
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It should be great if we could write
```
```
in place of
```
```
What do you think?
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According to the manual of JUM 2.0.2:
Under your working folder (/user/home/AS_analysis), you should have the following input files ready for JUM analysis ("*" indicates ctrl1, ctrl2, ctrl3, treat1, …