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https://mp.weixin.qq.com/s/P3PTa__VINI8iJU7i-hGAA
ixxmu updated
9 months ago
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Hi there!
Thanks so much for this wonderful ATAC resource, I have a question for you that may be simple. Rather inexperienced in the land of python, so any guidance you could provide would be gratef…
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Hi Tim,
Would you consider adding a function to call peaks for each cluster? To see some peaks (from rare cell types) might have been missed from calling from the bulk?
Thanks..
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Hi
I have a question: I am running ATACseq analysis and I wanted to know - `Do reads need to be DeDuped before FRiP calculation`
- when I say DeDuped - I mean running MarkDuplicates with `REMOVE_…
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Hello,
This wasn't a technical issue but I needed some advice so I'm writing on this github page. I've used the bismark tool to align and extract the methylation level of my sample but the level o…
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Hi there,
I have overloaded multiome data (with >20k cells), so I don't want to use cell ranger arc, which has a limit in the number of cells to be called.
Can I use the STARsolo for the multiome …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ZhangLabGT/scMultiSim
Confirm the following by ed…
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Does the DNA pipeline takes into account, in any step, the blacklisted areas, if they are stated in the genome.yalm?
Or the blacklisted areas are used only in, for example the ChIP-seq pipelines?
Th…
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Hi @satijalab!
Thanks for developing this great tool, which makes it very easy to annotate new single-cell datasets.
I'm the first author of the paper [An Atlas of Cells in the Human Tonsil](htt…