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The idea is to verify whether we can scale to substantial dataset sizes. We'll probably run into issues around GCP quotas and other issues.
For example, we could run a burden test on the UK Biobank…
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Hi,
I am getting the following error that I am not able to understand when using the finemal_loci() function to do ABF
[1] "+ Full UKB LD matrix: 22590 x 22590"
[1] "+ Full UKB L…
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Dataset info : https://github.com/awslabs/open-data-registry/blob/master/datasets/broad-gnomad.yaml
Name: UK Biobank Pan-Ancestry Summary Statistics
Description: A multi-ancestry analysis of 7,221 p…
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Hi Mark!
First of all, congrats for developing code to read .fda files. You made a great job!
I previously used your tool to extract .fds files to png but now it would be even more helpful to me t…
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At first, I thought some QC was done in the 200K release of the UKBB. In fact, I analyzed the variant (vmiss : Proportion of sample missing for every SNP) and sample level missingness (smiss: Proport…
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The README currently states:
> PATH_TO_REFERENCE (required): Full path (including folder name) to the directory that contains information on the LD reference panel (the snpinfo file and hdf5 file…
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The UKB baseline fields are well documented and the data dictionary can be programatically retrieved as txt or xml files (https://biobank.ctsu.ox.ac.uk/crystal/schema.cgi).
It could be beneficial t…
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Does our [Biosample](https://phenopackets-schema.readthedocs.io/en/latest/biosample.html) map well to the [MIABIS](https://github.com/MIABIS/miabis/wiki) standard?
https://github.com/MIABIS/miabis/…
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I generated the list of centres (based on the subjects that have all 3 MRI modalities) based on the information suggested (field 54 - assessment centre) by the UKBiobank. The resulted list has all cen…
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## Description
I git cloned the `uk-biobank` dataset on joplin to test preprocessing steps, it could'nt work because it was unable to open the nifti files.
When I try to get the header of a nifti f…