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Hi,
I'm using Signac regularly but since last week as soon as I want to use the coverageplot function, R freezes and I have to quit Rstudio and restart it.
I tried to reinstall all the package…
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Hi,
I have been using this wonderful package for a few years and it works great for my analysis of species like mouse and human data. Recently, I am working on the Gallus (chicken) and met some iss…
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Hi,
`vi_permute` fails on PLS perdict object.
``` r
library(plsmod) # parsnip helper for pls
#> Loading required package: parsnip
library(mixOmics) # for pls regression
#> Loading required p…
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**Otherwise**
I am trying to run MAST with a full single-cell dataset of multiple identified CD8 cell subtypes, one condition with two factors, and two timepoints. I am trying to run everything in on…
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I tried to follow the tutorial from "https://bioconductor.org/packages/release/bioc/vignettes/BioTIP/inst/doc/BioTIP.html", but with an error message with "getNetwork" function, and the information …
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Hello,
Is this function no longer available with scran?
Best,
Emily
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Hi I encountered the captioned error when running the run_drimseq() function. I'm running it on a Seurat object with transcript-level data integrated from 6 samples (3 treated; 3 untreated), so I skip…
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Hi Davide
I'm trying to run `zinbwave` on a moderately large dataset:
```
R> se
class: SummarizedExperiment
dim: 2572 8818
metadata(0):
assays(1): counts
rownames(2572): ENSG00000000419…
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Hi, I had met some problem when using your scripts, and I don't know whether it was due to some package update..
`> codon.ribo.density
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I am trying to run your example.R commands but shows error just like bellow.
> results