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## System and Software
* aicsimageio Version: 3.3.3
* Python Version: 3.7.6
* Operating System: Ubuntu 18.04
## Description
Failed to read a lif file with multiple Fov, it fails at [this line…
oeway updated
3 years ago
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I wasn't sure where to post this, but I'm hoping to add support for reading OME-TIFF files to Images.jl. I would also like to add mmap support as these files can get quite large, quite fast. I tried u…
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Hello,
I have uploaded the below given dataset into my container based omero server and could visualize and properly work with it via omero-web client
https://downloads.openmicroscopy.org/images/L…
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I'm trying to load a ~200MB big NDPI slide scanner file but this fails with this error message:
```
img = bioformats.load_image('/mnt/schoellingm/idaf/tmp/12-244-3-HE - 2012-03-12 22.30.10.ndpi', ser…
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Hi there,
I have downloaded some .scn images from here: http://openslide.cs.cmu.edu/download/openslide-testdata/Leica/
When I load these image (for example Leica-2.scn) using Openslide-python comman…
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I am trying to interface bioformats from python, as part of the PIMS project (https://github.com/soft-matter/pims/pull/144). My experience with JPype up to now is very good, but there is one issue tha…
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This issue was first raised in https://forum.image.sc/t/missing-metadata-for-ventana-images-in-qupath-with-bio-formats/28123
A sample file is available in QA-27763 and reproduces the issue.
From…
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Hi guys,
I tried to validate an OME-TIFF using the bftools (5.3.1) but encountered the followwing problem.
1) Acquire CZI image and save to disk - OK
2) Open image an Fiji using BioFormats and …
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It can happen that when opening a 3D dataset, bio-formats reads the metadata from a 2D file in the same folder (see also https://github.com/ome/bioformats/issues/2613). In that case, `omeMeta.getPixel…
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I just downloaded this version: https://github.com/abria/TeraStitcher/wiki/Binary-packages#terastitcher-portable-with-support-for-bioformats-command-line-version
But I cannot run Terastitcher at al…