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Working & undocumented links to certain databases exist and work. These links are not returned by einfo, but can be seen in the output of elink when no --linkname is specified. Using these links in …
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On the [VDJ_Analysis_fixed](https://ucdavis-bioinformatics-training.github.io/2020-Advanced_Single_Cell_RNA_Seq/data_analysis/VDJ_Analysis_fixed) page, right after "`head(s_balbc_pbmc[[]])`" the entir…
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The following chapters are incomplete or missing:
- [ ] Available platforms
- [ ] Synchronising code and outputs
- [ ] Making one thing run faster
- [ ] Running many things at the same time
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https://github.com/yang-dongxu/small_tools_of_bioinformatics/blob/1d8ab6664195bdb6d387b5d772dfd9b01f78339a/bw_summary_bed_bins.py#L82-L93
The chaotic output is caused by line 89:
https://github.co…
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consider adding PAM-style matrices
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mpileup for variant output command probably needs fixing
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
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Hi all,
Sorry if this question is silly.
I have several fasta files from some kegg orthogoly of my interest which I extracted from prodigal and hmmsearch result. For example, the nifH, that is the…
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## **Is your feature request related to a problem? Please describe.**
See #1581 for how this feature request started or other context.
Others:
https://github.com/snakemake/snakemake/issues/917
h…
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Hi,Dengfeng
I’m a beginner of bioinformatics and recently use purge_dups to purge my assembled genome. Purge_dups v1.2.5 was installed with conda. When running “Step 1”: pbcstat *.paf, I did not achi…