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i am trying to cross link between three records as described and shown in biopython tutorial
I am reporting a problem with biopython-1.71, Python version 3.4, and operating
system Ubuntu (bio-linu…
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This goes in the same direction as #2008: [isort](https://github.com/timothycrosley/isort) is a small little tool to make the code style more similar.
## Why import sorting?
I like it, because i…
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Migrated from https://redmine.open-bio.org/issues/2034 which I filed in 2006-06-27.
Cross reference #292 which added output in this format.
> This is a slightly updated version of the code I poste…
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Since installing augustus from source without root previleges wasn't easy for me, I thought posting here the commands I used for installation.
* If not already done, install [conda](https://docs.c…
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See discussion and proof of principle from @MarkusPiotrowski on #3845.
The idea is ``test_NCBI_qblast.py`` would use the new timeout setting, and if it times out, abort the rest of the QBLAST tests…
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> > The NCBI is now making a new version of the BLAST XML available for
> > testing. Read about the changes and how to access BLAST results using
> > the new XML at ftp://ftp.ncbi.nlm.nih.gov/blast/d…
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I can't running your script because the utils is giving this error in jupyter notebook!
Any tip for make it work?
Thank you
```
NameError Traceback (most recent…
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I'm opening this issue to track known issues with running the tutorials on Colab and discussing potential solutions:
- Colab installation is slow: The tutorials currently install deepchem as in thi…
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I found an issue related to the MSAsearch function in scaTools.py. I am new to python and just came up with a naive solution. But the output it not consist with that described in the pySCA tutorial.
…
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Hi,
I'm having issues with running the pipeline. The first warning message is BiopythonParserWarning. Then next is "No wat to run job"... Upon checking the bam and vcf folders, there were no files …