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katholt
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RedDog
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checkBam failure - no BAM file generated
#76
illumina-ti
closed
1 year ago
2
Issue with the script_Table2genomealignment.py
#75
krishna1925
opened
2 years ago
0
Error: command failed: python convertGenbankToFasta.py
#74
kesiaeds
opened
3 years ago
0
Outputting a fasta with invariant and variant sites
#73
AdrianAllen1977
closed
3 years ago
6
BiopythonParserWarning
#72
deearahman
opened
3 years ago
6
ERROR MESSAGE IN CONFIGURATION QUERY
#71
vappiah
closed
4 years ago
1
Error at first stage - Pipeline is not running
#70
kesiaeds
opened
4 years ago
21
Pipeline not creating SNP consequences file
#69
spencer411
opened
4 years ago
6
Removing individuals from Merge output folder
#68
spencer411
closed
4 years ago
3
V1b11
#67
d-j-e
closed
5 years ago
0
Should the read data be preprocessed before running RedDog?
#66
quocviet0908
closed
5 years ago
1
Could I use RedDog to map sequence reads to few genes (not the whole genome)?
#65
MostafaYA
opened
5 years ago
2
how to make RedDog fast?
#64
MostafaYA
opened
5 years ago
2
Problem with installing RedDog
#63
quocviet0908
opened
5 years ago
2
Missing RedDog_Extras
#62
kloetzl
opened
5 years ago
0
remove reconstruction
#61
demonoLi
opened
5 years ago
0
qsub command failed with exit status: 172
#60
vealvarez
opened
5 years ago
4
Issue with plotTree R code
#59
spencer411
closed
6 years ago
6
SLURM and RedDog
#58
nschiraldi
closed
6 years ago
2
No BAM file error
#57
spencer411
closed
6 years ago
2
Use of parseSNPtable.py
#56
MostafaYA
closed
6 years ago
2
Conda Install
#55
JChristopherEllis
closed
6 years ago
1
Failed to run 'python checkBam.py.....BAM too small: deleted
#54
SabeenR
closed
6 years ago
2
[False ->dir.makeDir.Success]
#53
SabeenR
closed
6 years ago
25
V1b10.3 CalicoCat
#52
d-j-e
closed
8 years ago
0
various minor fixes and one bug fix
#51
d-j-e
closed
8 years ago
0
update RedDog_config
#50
d-j-e
closed
8 years ago
0
V1b10
#49
d-j-e
closed
8 years ago
0
New version of RedDog (v1beta.9)
#48
d-j-e
closed
8 years ago
0
changes for sysgen
#47
d-j-e
closed
8 years ago
0
tutorial update
#46
d-j-e
closed
8 years ago
0
Pipeline not progressing past checkBam
#45
RMann24
opened
8 years ago
8
Error at first stage of pipeline
#44
jasonshiller
opened
9 years ago
14
BUG (v1b6): Variant call filtering on quality not working
#43
d-j-e
closed
9 years ago
1
Latest release (v1beta.6)
#42
d-j-e
closed
9 years ago
1
account settings
#41
jasonshiller
closed
9 years ago
1
Wiki request: PresenceAbsence.csv depth cutoff
#40
scwatts
closed
9 years ago
1
configuration
#39
adrianmu
opened
9 years ago
12
Adding links in the table of contents and adding bookmarks in the manual and tutorial
#38
wanyuac
closed
2 years ago
2
ascertainment bias and fasttree
#37
d-j-e
closed
9 years ago
0
Feature Request: turn off modules during merge runs
#36
prmcadam
closed
9 years ago
4
amendment to large_RedDog_config
#35
prmcadam
opened
9 years ago
1
Consequences file RNA coordinate off by one.
#34
prmcadam
closed
9 years ago
1
Typo in the manual
#33
mscook
closed
9 years ago
3
checking for dependencies
#32
jhawkey
opened
9 years ago
0
bcftools missing as a dependency
#31
jhawkey
closed
9 years ago
1
flowchart picture
#30
d-j-e
opened
9 years ago
0
Bowtie Error "mkfifo"
#29
lesleygray
opened
9 years ago
1
Matching paired-end reads
#28
wanyuac
closed
9 years ago
4
samstats step failing
#27
prmcadam
closed
9 years ago
1
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