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Hi - I ran the easy-search command (newest release, 6f452, self-compiled with cmake 3.25.2 and gcc 12.2.0) on a Linux system with the example query and database file from the MMseqs2 repository and en…
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```
Hello,
As I have observed in this thread, Issue 22,
https://code.google.com/p/interproscan/issues/detail?id=22
I am having the blast failure occur during the PIRSF search. The specific
error i…
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Dear Authors,
When trying to run GLASSgo.py with NCBI nt.67 database, I am seeing this error:
Traceback (most recent call last):
File "/home/mlee/Borellia_sRNA/GLASSgo/GLASSgo_GI-Version-mast…
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Currently the documentation instructs and the code downloads `prot.accession2taxid.gz` which doesn't have all of the `nr` accessions.
Proteins that aren't found in `prot.accession2taxid.gz` are assi…
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### Use Case
I'm building a new application that using DynamoDB table, API and a vite application.
When I'm making small changes to my wing application (adding logs for example in my API), the rec…
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Migrated from https://redmine.open-bio.org/issues/2929 filed by Miguel, on 2009-10-15, in reference to the table parser issue now logged as #1721.
> With the problems encountered while parsing plai…
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I configured locBLAST in UBUNTU server with address http://14.139.224.59/BpGDB-BLAST/. The text view is working fine but graphical view is not working. While selecting graphical view it shows blank r…
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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [exon…
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For [https://github.com/OSGConnect/tutorial-stashcache-blast/blob/master/README.md](url), database files _should not_ be divided for blast, as the statistics of how well each read matches to a databas…
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I believe the tutorial for torchgfn could be more friendly with the following ideas:
- Using Jupyter Notebook with Google Colab support and step-by-step descriptions.
- Visualization of learning pro…