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Autometa
Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
https://autometa.readthedocs.io
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Error in AUTOMETA:TAXON_ASSIGNMENT:LCA:PREP_DBS
#363
bindiyabajracharya
opened
2 weeks ago
5
Fix hdbscan binning
#362
Sidduppal
closed
3 weeks ago
0
Fix NA issues after Pandas update
#361
chasemc
closed
3 weeks ago
5
"TypeError: boolean value of NA is ambiguous" came back
#360
imonteroo
closed
3 weeks ago
1
Release 2.2.2
#359
Sidduppal
closed
1 month ago
0
:bug: new GC function in autometa.common.utilities to replicate now dā¦
#358
shaneroesemann
closed
1 month ago
0
module 'Bio.SeqUtils' has no attribute 'GC' in autometa-length-filter
#357
imonteroo
closed
1 month ago
4
Fix Issue#349
#356
Sidduppal
closed
3 weeks ago
2
Fix Issue#349
#355
Sidduppal
closed
4 months ago
0
:arrow_up: bump readthedocs-sphinx-search; 0.1.1 to 0.3.2
#354
chasemc
closed
5 months ago
1
Fix Issue#350
#353
Sidduppal
closed
4 months ago
2
Fix issue#347
#352
Sidduppal
closed
1 month ago
0
:memo: Update Contributor Covenant
#351
chasemc
opened
7 months ago
2
line_terminator not lineterminator use in .to_csv from pandas throws error with pandas > 1.5
#350
hyphaltip
closed
1 month ago
2
NA ambiguous in recursive_dbscan
#349
hyphaltip
closed
3 weeks ago
12
Update installation.rst
#348
chasemc
closed
2 weeks ago
0
ncbi rsync error when downloading markers
#347
hyphaltip
closed
1 month ago
4
Release 2.2.1
#344
evanroyrees
closed
10 months ago
1
:bug::art::snake: Refactor 'unclassified' handling
#343
evanroyrees
closed
10 months ago
1
š Update documentation
#342
evanroyrees
closed
10 months ago
0
š:bug::snake: Fix bug for 0 passing predictions
#341
evanroyrees
closed
10 months ago
2
:fire::whale::green_heart: Fix docker-builds by removing pinned dependencies
#340
evanroyrees
closed
10 months ago
5
:bug::shell: Fix GTDB taxon-binning workflow
#339
shaneroesemann
closed
10 months ago
0
šØ š Issue 330 redo
#338
shaneroesemann
closed
11 months ago
1
š add pre-commit hook to remove unused imports mentioned in Issue #330
#337
shaneroesemann
closed
11 months ago
0
:snake: add pre commit hook to remove unused imports as in Issue #330
#336
shaneroesemann
closed
11 months ago
0
Issue 329 sed cut
#334
shaneroesemann
closed
11 months ago
0
kingdoms does not need to be defined multiple times in workflows/autometa_flagged.sh
#332
jason-c-kwan
opened
11 months ago
0
Replace `conda` commands with `mamba` and add `-c conda-forge` channel to `mamba install autometa`
#331
evanroyrees
closed
10 months ago
0
Add "remove unused imports" hook to pre-commit hooks
#330
evanroyrees
closed
10 months ago
0
:bug: Fix GTDB database setup
#329
Sidduppal
closed
10 months ago
14
autometa-update-databases, error building GTDB diamond database
#328
Kohtzanth
closed
10 months ago
2
š Fix pytest error
#327
evanroyrees
closed
10 months ago
0
Fix Biopython deprecation warning
#326
evanroyrees
closed
1 month ago
1
:snake::art::fire::bug: Fix UnboundLocalError bug
#325
evanroyrees
closed
10 months ago
1
:bug: in `autometa-binning-ldm`: Missing/incorrect `binning_checkpoints` variable init/assignment
#324
evanroyrees
closed
10 months ago
0
š§āš§ š Fix docs
#323
Sidduppal
closed
1 year ago
0
Look into using taxon result limited blastp instead of top-n limited
#322
chasemc
opened
1 year ago
1
Propagate unclassified contigs
#321
kaw97
closed
10 months ago
1
singularity image urls
#320
kaw97
closed
1 year ago
1
Fix BLAST results protein to taxonomic accession assignment
#317
chasemc
opened
1 year ago
1
singularity image urls
#316
kaw97
closed
10 months ago
1
Singularity images
#315
kaw97
closed
1 year ago
1
Step by step walkthrough
#314
kaw97
closed
1 year ago
1
Step by step walkthrough
#313
kaw97
closed
1 year ago
3
Propagate unclassified contigs
#312
kaw97
closed
1 year ago
2
:bug:š :memo: Autometa modules in documentation are empty
#311
evanroyrees
closed
1 year ago
0
Change arg name `--norm-output` for `autometa-kmers` entrypoint
#310
chasemc
opened
1 year ago
2
Move unrelated files out of Nextflow pipeline directory
#309
chasemc
opened
1 year ago
1
Missing example data causes gdown script to fail
#308
chasemc
opened
1 year ago
4
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