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Hi there,
Thanks for the wonderful tool.
Do you have a vignette to perform NicheNet analysis for flow-sorted Bulk RNA-seq data?
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**List the new value:**
value: `Single Cell RNA-Seq`
**Provide definition of the new value:**
definition: A procedure that can determine the nucleotide sequence for all of the RNA transcripts in …
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@mvonpapen commented on [Tue Sep 24 2019](https://github.com/HumanCellAtlas/data-portal-content/issues/315)
Thank you for submitting a portal to the HCA DCP Methods Registry!
To expedite your port…
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**Describe the issue**
I would like to run `kb count` on a list of FASTQs from a SMART-seq (v1, bulk RNA-seq) experiment. The reads are single-end. The `kb count` instructions specify that counting o…
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Hi
I recently came across TED and I am trying to use it for some synovial fluid bulk RNA-seq data but I have been getting the following error when I use run.ted()
```
Number of outlier genes filte…
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new client code for snRNA submission needs to be developed.
Requirement:
1. 2 files have to be submitted for snRNA: R1 and R2.
2. Files are identified by their barcode and read number (R1 or R2)
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Hello Kevin,
After installing scaden via pip(I am using macOS), I tried running it for the example data, but it gives error saying:
Error: No such command 'example'.
Could you suggest why thi…
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Hello,
I have questions about the software outputs especially on 10x Genomics data.
- First, will there be more specific explainations about the meaning of each column names in all output files…
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Can I use arcasHLA for cancer scRNA-seq data?
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Related to AlexsLemonade/2021-march-training#17 - linking from that branch: https://github.com/AlexsLemonade/2021-march-training/blob/89854602f37a8354e8f9059f2f09854ce3a2f0f9/workshop/resources-for-co…