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## Feature Request
### Desired behaviour
As per https://gitter.im/ga4gh/dockstore?at=5bf7fdfab5154c550051df48 , for a hotfix, update and test a version of cwltool with monitoring tools against veri…
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I wanted to run [this workflow](https://github.com/adamnovak/amazon-genomics-cli/blob/e02d7fc8821d06a00c2f343009aadaa4b6c30ae6/examples/demo-cwl-project/workflows/s3demo/s3demo.cwl) in [this directory…
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Maybe it's just because it's my focus, but I think CWL parsing is going to be a nightmare to write ourselves (even if it is for a *perfect subset* of CWL). I'm going to spend a little time looking at …
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I used [cwlpack](https://github.com/rabix/sbpack) to pack the conformance test [scatter-wf4](https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/tests/scatter-wf4.cwl). The result…
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Hello,
We started seeing this problem several weeks back. We have tried many iterations of different configurations and such. Our cluster is using SLURM as the job manager. It is using Centos 7.8.…
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**Is your feature request related to a problem? Please describe.**
Bump cwltool version to a more recent version
┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/DO…
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## Feature Request
### Desired behaviour
Update requirements.txt and recommendations in UI as needed
Extends #2364
┆Issue is synchronized with this [Jira Epic](https://ucsc-cgl.atlassian.net/brows…
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Run end-to-end tests against Phosphate, to validate that Toil and Phosphate can interoperate. An ideal test target might be the CWL conformance tests, but other target workflows could be selected in c…
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Figured there should still be an issue for this.
Running bcbio (from the [GA4GH-DREAM challenge](https://www.synapse.org/#!Synapse:syn9725771)) on AWS gives an unknown Expression evaluation error in …
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Would allow for filenames with `:` and other non-standard characters in them
┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/TOIL-182)
┆Issue Number: TOIL-182