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**Submitting author:** @HajkD (Hajk-Georg Drost)
**Repository:** https://github.com/HajkD/LTRpred
**Version:** v1.1.0
**Editor:** @lpantano
**Reviewers:** @dcassol, @mdozmorov
**Archive:** 10.528…
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Hi, I'm testing medaka methylation with 4 fast5 files.
Seems to work, but then I get these messages:
"[E::sam_parse1] SEQ and QUAL are of different length
[W::sam_read1] Parse error at line 1143
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sr320 updated
4 years ago
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**Describe the bug**
guppy2sam produced an empty BAM file
**Logging**
The relevant command lines are pasted:
(medaka) [xzhan9@Nucleus005 nanopore]$ medaka methylation guppy2sam --reference $…
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Hello,
The terms 'GO:0005724 nuclear telomeric heterochromatin' and 'GO:0031933 telomeric heterochromatin' will be obsoleted, see https://github.com/geneontology/go-ontology/issues/19086.
The t…
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Hi,
When I try to extract methylation information on CpG, CHH and CHG motif follow the instruction of tombo documentation, like this:
`tombo preprocess annotate_raw_with_fastqs --processes 60 --o…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/metamaden/recountmethylation
Confirm the followin…
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olegs updated
4 years ago
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Hi, I'd like to rule out a scientific hypothese and I needed to have methylation data on mitochondrial DNA.
I searched on SRA NCBi and found out this :
https://trace.ncbi.nlm.nih.gov/Traces/sra/?ru…
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Hi Jared,
our group has been using Nanopolish quite heavily, it really is a great tool.
I'm not sure if this is a bug, but I've found a discrepancy in the python script calculate_methylation_fr…