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I'd like to run the `significant_bases_by_randomisation.py` script. I tried installing `iCLIPlib` with `cgatcore 0.5.4` and `cgat-apps 0.5.3` installed from bioconda as they seemed to be the latest ve…
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K-means clustering yields some interesting results:
Plotting centroids of *asinh(tpm) - sva* for k=5,10,15,20,25, we see some interesting patterns emerging for k>=10, especially for the lateG1 tim…
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Hi users and developers,
After the use of MTAG the mean chi2 of TRAIT_1 increased from 1.088 to 1.417.
According to the increase of mean chi (1-mean chi^2 MTAG)/(1-mean chi^2 GWAS), my GWAS equ…
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The following code was working, now it's returning a warning, "Warning: Ignoring unknown parameters: `FDR`"
```r
plotmeth0
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Hi,
I've installed DROP v1.3.3 as per:
`mamba env create -f DROP_1.3.3.yaml`
taken from: https://www.cmm.in.tum.de/public/paper/drop_analysis/DROP_1.3.3.yaml
When running the demo, OUTRIDER th…
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### Describe the workflow you want to enable
Metrics are **Extremely Important** for benchmarking models' performance. But in **scikit-learn**, it is not easy to extract these metrics from a **mult…
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Dear MS-DIAL developers,
I would need some of your help to understand the 'total score' in the exported alignment result.
I read the tutorial and the publication about the equations and how the …
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Hi Liz,
I'm using isoPhase to assign haplotypes to isoforms, but I have some questions in reading your source code.
Here https://github.com/Magdoll/cDNA_Cupcake/blob/master/phasing/io/MPileUpVaria…
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`threat.indicator.first_seen` is coming as a `keyword` on kibana. Its type is mentioned as a `date` in the ECS documentation- https://www.elastic.co/guide/en/ecs/current/ecs-threat.html#field-threat-i…
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Start with min, mean, and max GDD thresholds. Create rasters with two layers—slope coef and FDR adjusted p-values.
Get these running on on the HPC before thinking more about GAMs. Might need to spli…
Aariq updated
1 month ago