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@deustp01 URL for testing?
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Right now, there are quite a few GOC annotations floating around in the Gene Ontology and related resources. The issue is CURIEs in the form of GOC:XXX can't be resolved, and the fact that they use in…
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I realise no AmiGO work is going on right now but I have been meaning to report this for a while.
This is an example that I think it clear.
I am looking at the gene products annotated to the GO…
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- [x] add ortholog sln1
- [x] standardise products
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Tabs can be linked directly by using the # character followed by tab name in lowercase. eg: http://beta.monarchinitiative.org/disease/DOID:14330#variants
However, this is not immediately obvious; it w…
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Discussed on managers call https://github.com/geneontology/pipeline/issues/300
A statistic that is very useful for GO is the number of genes that are not mapped to the reference proteome *for which…
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Add some high-level documentation at the top level.
http://owlcollab.github.io/owltools/api/owltools/cli/AssertInferenceTool.html
The main spec could go here, or live separately cc @dosumis
This is …
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```
During the conversion of obo2owl the annotations for xref clauses are lost. For
example:
xref: Reactome:REACT_100439 "lactose + H2O => D-glucose + D-galactose, Gallus
gallus"
is after the roun…
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I'm trying to validate this file:
[bug.owl.txt](https://github.com/iovka/shex-java/files/4206537/bug.owl.txt)
Using the following shape map and schema. (Remove the .txt from everything for typica…
goodb updated
4 years ago
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Action item from Oct 2017 GOC meeting.
The original formulation of the ticket was: ECO codes available for use in Noctua should show how they map up to a classic GO code, and there should be an al…