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Hello, when I was running braker, I encountered the following problems. How can I solve it?
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1.Gene…
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Error introduced in https://github.com/ebi-gene-expression-group/atlas-annotations/commit/8f0da818153dfb04139e896638b934c87a08767c
The following `println` statement in `src/Directories.sc`:
```
p…
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### Description of feature
At the moment everything is published, including intermediary files. We might have to think of more long-term solutions for some of these, but a fix in the near future is n…
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I am having this problem using the SAM file to identify the off-target
python ~/bin/guideseq-1.0.2/guideseq/guideseq.py identify --aligned ~/Desktop/WORKS/CODE/download/AA_1.sam --target_sequence c…
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We need to create structures for housing the data from axolotl-omics.org
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Hi,
After successfully using gff3_QC, gff3_fix is giving me the following error:
```
(genometools) [safiand@login001 grass]$ gff3_fix -qc_r test.txt -g turneri_annotation.gff3 -og new_corrected.g…
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Hi Agora-team,
I have been trying to learn how to construct ancestral genome karyotype for ever, and was never been able to understand it properly and then saw your paper and I was like wow. It is …
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**Are you using the latest release?**
funannotate v1.8.17
**Describe the bug**
When I run funannotate predict I get an error
[Oct 15 05:17 PM]: Training Augustus using BUSCO gene models
Error: …
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Hello,
I was hoping you may be able to clarify a COG annotation question. Apologies if this is a silly question I've just struggled to find an answer and I'm quite the amateur. I've used a pangenom…
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Hello,
Thank you for creating such an innovative tool! I am using `velocyto` upstream of `scvelo` to analyze my 10x single cell sample and am encountering some strange results. `scvelo` returns maj…