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Hi Brian,
I am running Trinity's In silico Read Normalization, and found that the default number for "--max_pct_stdev" varied from 100 to 200 and even to 10000 among different versions of Trinity. …
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Provide in-silico Contamination generator based on differing haplotypes
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In the example, it all starts from bam nad peak file, is there any easy way to use scATAC directly from count matrix if we already pre-processed the data?
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Hi there,
Similar to the previous issue at https://github.com/trinityrnaseq/trinityrnaseq/issues/576. My _de novo_ assembly hanged at 99.9998%. It's a pretty big _de novo_ transcriptome consists o…
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Dear Brian,
I try to assemble 12 libraries from one species and seems that I have issues with normalization. A huge number of reads are discarded during that process.
10205696 / 393835024 =…
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Hello,
I am currently working on a genotyping project that involves the use of highly variable gene markers. We used the Nextera kit for the library preparation prior to illumina sequencing in pair…
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**Submitting author:** @TomKellyGenetics (S. Thomas Kelly)
**Repository:** https://github.com/TomKellyGenetics/graphsim
**Version:** 0.1.2
**Editor:** @majensen
**Reviewers:** @rcannood, @corybrunson
…
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Would it be possible to return the version of ExAC, 1000G and ESP on the page via myvariant.info? Curators would like to see this.
If not, we can add a noter that basically says the data is what is …
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### Expected behavior
When selecting a cerebellum/purkinje model I expect to see an image of the responses and the morphology.
### Actual Behavior (please include screenshot if possible)
No …
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Hi Bjorn,
First off, thank you: I love Pydna and I really appreciate that you respond to my issues and make updates!
Recently, I had a new issue which I have not had before, and despite trying t…