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Example use case: when importing or converting mixs for use in nmdc schema
@turbomam and @sujaypatil96 were thinking of using from_schema but this is readonly and populated by the loader
```yaml…
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- run `make docs/template/nmdc_dh/schema.js` in `issue-100-netlify-linkml-datastructure` branch
- git add, commit and push
- visit https://github.com/microbiomedata/sheets_and_friends/pull/101 to fi…
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- [X] Use the relation-graph tsv branch to generate closures (starting with just subclass of to start)
- [X] Create node-names tsv file (full nodes file does not load well into BigQuery, plus we just…
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We frequently need to encode the unit for a measurement. LinkML allows this to be modeled different ways
1. baking a unit into a slot, e.g. `depth_in_meters` range: float
2. using a QUDT-like data…
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**Describe the bug**
When using the v2.4.2-alpha-qualifiers release, biolink model toolkit (v0.8.4) seems to fail. In the model in that release (biolink-model.yaml) there are a couple of imports that…
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`poetry run gen-yaml nmdc-schema/src/schema/nmdc.yaml > target/nmdc_generated.yaml`
> WARNING:YAMLGenerator:Unrecognized prefix: rdfs
WARNING:YAMLGenerator:Unrecognized prefix: insdc.srs
WARNING:…
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was there an error? what was it?
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- [ ] Add poetry as a package management project.
- [ ] Setup build and publish capabilities
- [ ] Autodocs (works hand-in-hand with #71 )
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We want to be able to output a subset of classes and slots in JSONSchema artifacts for use in ingesting data in bulk (without maintaining a hand-written JSONschema separate from our LinkML model)
A…
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**Describe the bug**
When following part 8 of the tutorial on a German Windows-10 PC, the generation of the project failed with a UnicodeEncodeError (see traceback).
**To Reproduce**
Steps to r…