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geneontology
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go-shapes
Schema for Gene Ontology Causal Activity Models defined using RDF Shapes
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Update go-cam-shapes.shex
#318
tmushayahama
closed
3 weeks ago
0
Converter example - add prefixmaps (and curies), remove ontobio.
#317
sierra-moxon
opened
1 month ago
0
Getting the new Shex into the json export code
#316
tmushayahama
closed
1 month ago
0
Issue noctua standard annotations 14 kva draft
#315
tmushayahama
closed
1 month ago
0
Clarify ShEx
#314
vanaukenk
opened
1 month ago
0
Update WIP_standard_annot_ShEx
#313
vanaukenk
closed
2 months ago
0
Update go-cam-shapes.shex
#312
vanaukenk
closed
2 months ago
0
Update WIP_standard_annot_ShEx
#311
vanaukenk
closed
3 months ago
3
Create WIP_standard_annot_ShEx
#310
vanaukenk
closed
3 months ago
5
Update ShEx to use primary input and primary output
#309
vanaukenk
opened
3 months ago
1
Fix obsolete GO terms in test models.
#308
balhoff
closed
3 months ago
2
Add experimental SheX for a GO-CAM limited to the GPAD spec.
#307
balhoff
opened
5 months ago
0
Experiment with minimal/"GPAD" ShEx
#306
kltm
opened
5 months ago
7
Update test files so that checks will work
#305
balhoff
closed
6 months ago
0
Replace obsolete native cell with cell
#304
balhoff
closed
6 months ago
5
Allow multiple enablers
#303
balhoff
closed
6 months ago
0
Replace CARO anatomical entity with Uberon
#302
balhoff
opened
1 year ago
2
Negation in Shapes for CC and Small Molecules
#301
tmushayahama
opened
1 year ago
2
Update go-cam-shapes.shex
#300
vanaukenk
closed
1 year ago
0
Add 'small molecule regulator' relations to the MF shape
#299
ukemi
opened
1 year ago
2
Remove 'directly activates' after all MF-MF relations are updated in existing models
#298
vanaukenk
opened
1 year ago
0
Update go-cam-shapes.shex
#297
vanaukenk
closed
1 year ago
0
Adding has_primary_input and has_primary_output to transporter activi…
#296
vanaukenk
closed
1 year ago
0
Adding has_primary_input and has_primary_output to MF shape
#295
vanaukenk
closed
1 year ago
0
Add has_primary_input to transporters/transport
#294
ukemi
closed
3 months ago
0
Error in gen-project-linkml.yaml on dev branch(?)
#293
kltm
opened
1 year ago
0
Adding annotation extension exclusion for 'location of'
#292
vanaukenk
closed
1 year ago
0
LinkML Typescript with array
#291
tmushayahama
opened
1 year ago
0
Json Export
#290
tmushayahama
closed
1 year ago
1
add linkml dumper and swap to python classes
#289
sierra-moxon
closed
1 year ago
0
Separate branches for dev and for production server
#288
tmushayahama
opened
1 year ago
3
Add Root MF Shape
#287
tmushayahama
opened
1 year ago
0
Change contributor and provider values to IRIs
#286
balhoff
opened
1 year ago
1
Add preliminary extension exclusions.
#285
balhoff
opened
1 year ago
3
Adding relations and shapes for BPs - metabolic process and tranpsort
#284
vanaukenk
closed
1 year ago
1
Add has_primary_input/output to BP shapes?
#283
ukemi
closed
3 months ago
2
Json export in LinkML
#282
sierra-moxon
closed
1 year ago
3
Adding new MF-MF causal relations
#281
vanaukenk
closed
1 year ago
5
Update ShEx for new MF-MF relations
#280
vanaukenk
opened
1 year ago
0
Separate out application and shape metadata
#279
kltm
opened
1 year ago
0
Discuss the JSON schema
#278
kltm
opened
1 year ago
4
Create example LinkML schema from JSON
#277
kltm
closed
1 year ago
4
Add GitHub actions to convert GO ShEx to necessary secondary data products
#276
kltm
opened
1 year ago
0
Explore adding comments to ShEx, to aid extracting information from the schema into secondary data products
#275
kltm
opened
1 year ago
0
Update go-cam-shapes.shex
#274
vanaukenk
closed
2 years ago
0
Update ShEX rules for transporter activity
#273
ukemi
opened
2 years ago
1
Add two new model level annotations: “maximal-causal-chain-length” and “display-as-pathway-override”
#272
kltm
opened
2 years ago
0
Update go-cam-shapes.shex
#271
vanaukenk
closed
2 years ago
0
Adding existence_overlaps and existence_starts_and_ends_durig
#270
vanaukenk
closed
2 years ago
0
Include 'contributes to' in ShEx?
#269
vanaukenk
closed
2 years ago
1
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