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Hello
Many thanks for providing methylprep.
May I ask if the analysis of files originating form Infinium MethylationEPIC v2.0 chips is already possible?
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Hi Patrick,
I'm trying to get CellNet to work locally on my workstation, but I got error on step cn_salmon(stQuery) saying parrellel command not found. So I figured this step calls salmon using par…
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I'm trying to make cn_Proc with my own data which has 1 cell type and all have the same description.
At the step to construct C/T-specific GRNs, it is throwing an error.
The command that I'm usin…
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Hi,
I was trying to run locally the procedure (mouse example). I encountered the following error at step 8:
> cnRes1
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The error is below.I want to know how to solve it.Thank you.
determining read length
Trimming reads
sh: 1: parallel: not found
Salmon
sh: 1: parallel: not found
rm: cannot remove '*trimmed.fq': …
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native-platform project publishes a lot of jar files, however they do not mention which license is in place.
1) Please add `Bundle-License: Apache-2.0` manifest entry (where `Apache-2.0` is SPDX id…
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Hi,
thanks for providing this code to read GESLA data!
I just wanted add a minor comment on line 89 in gesla.py.
`idx = [s.Index for s in self.meta.itertuples() if s.filename in filenames]`
It …
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Hi all, I have a theory question, not an issue for once. So I have all these seurat clusters from different samples which were merged (no batch effect) and thereby have metadata inherited from their s…
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Tools explored:
1. PymuPDF
2. DIT (https://huggingface.co/spaces/nielsr/dit-document-layout-analysis)
3. Nougat: https://huggingface.co/spaces/ysharma/nougat
4. AXAParser
1,2and 4 have document…
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**Bug description**
Analysis of Statix Spec fails after renaming some functions
**Versions**
Eclipse: org.eclipse.platform.ide 4.16.0.I20200604-0540
Spoofax: org.metaborg.spoofax.eclipse 2.6.0.2…