issues
search
FoxoTech
/
methylprep
Python-based preprocessing software for Illumina methylation arrays
MIT License
34
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Code needs to be updated for Illumina MethylationEPIC-8 v2.0 arrays
#132
petermchale
opened
2 weeks ago
2
methylize diff_meth_regions throwing an error
#131
harshaa10
opened
6 months ago
0
Unable to download the latest version of methylsuite v1.7.1
#130
harshaa10
opened
6 months ago
0
Any groups for exchange?
#129
Shahin-rmz
opened
1 year ago
0
methylprep generates only csv files, so methylcheck doesn't work
#128
chrishenan
opened
1 year ago
0
adapted code for pandas2.0
#127
gilgameshjw
opened
1 year ago
8
Bump certifi from 2022.6.15 to 2023.7.22
#126
dependabot[bot]
opened
1 year ago
0
methylprep not working with pandas version >2 due to API changes
#125
ghost
opened
1 year ago
0
Bump scipy from 1.8.0 to 1.10.0
#124
dependabot[bot]
opened
1 year ago
0
Analysing Infinium MethylationEPIC v2.0 Kit already implemented?
#122
claus-h-g
opened
1 year ago
8
Bump requests from 2.27.1 to 2.31.0
#121
dependabot[bot]
opened
1 year ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.3.2
#120
ghost
opened
1 year ago
0
copy number
#119
AntoniaGocke
opened
1 year ago
0
Bump setuptools from 63.1.0 to 65.5.1
#118
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2022.6.15 to 2022.12.7
#117
dependabot[bot]
closed
1 year ago
1
How to control filtering in command line
#116
rowanhowellGE
opened
2 years ago
0
Feature/v1.7.1
#115
marcmaxson
closed
2 years ago
0
Feature/v1.7.0 -- adds parquet support
#114
marcmaxson
closed
2 years ago
2
Bump lxml from 4.7.1 to 4.9.1
#113
dependabot[bot]
closed
2 years ago
0
incorp Mauro's updates (pNegECDF and infer switch) into v1.7.0
#112
marcmaxson
closed
2 years ago
1
correct both addressA and addressB for OOB probes when channel swapping
#111
notmaurox
closed
2 years ago
0
Adapting sample_sheets.py to Windows users
#110
f-marchi
opened
2 years ago
0
Addition of negative control based pvalue calculation
#109
notmaurox
closed
2 years ago
0
Feature/v1.6.3
#108
marcmaxson
closed
2 years ago
1
Update pOOBAH pval calculation
#107
notmaurox
closed
2 years ago
0
custom manifest support
#106
notmaurox
opened
2 years ago
0
minor bug fixes
#105
marcmaxson
closed
2 years ago
1
Control of output file location/names
#104
paulaberry
opened
2 years ago
1
Feature/v1.6.1
#103
marcmaxson
closed
2 years ago
1
Accessing probe intensities for QC metrics
#102
notmaurox
closed
2 years ago
0
Manifest
#101
stefdecondor31
opened
2 years ago
3
CLI does not import the right module
#100
lbeltrame
opened
2 years ago
0
RFE: Allow to specify output directory of methylprep-cli
#99
lbeltrame
opened
2 years ago
0
Feature/v1.6.0
#98
marcmaxson
closed
3 years ago
0
Feature/v1.5.8
#97
marcmaxson
closed
3 years ago
0
Feature/v1.5.7 -- unlocks pandas (v 1.3.0+ supported now)
#96
marcmaxson
closed
3 years ago
0
feature/v1.5.6 and feature/v1.5.5-docs
#95
marcmaxson
closed
3 years ago
0
Feature/v1.5.5 docs
#94
marcmaxson
closed
3 years ago
0
Feature/v1.5.5 docs
#93
marcmaxson
closed
3 years ago
0
Feature/v1.5.5
#92
marcmaxson
closed
3 years ago
0
Feature/v1.5.3
#91
marcmaxson
closed
3 years ago
0
download support TAR of BED files too
#90
marcmaxson
opened
3 years ago
1
Feature/v1.5.2
#89
marcmaxson
closed
3 years ago
0
patch to help read_geo_processed.py detect txt csv files better
#88
marcmaxson
closed
3 years ago
0
Feature/v1.5.0
#87
marcmaxson
closed
3 years ago
0
Bump urllib3 from 1.26.4 to 1.26.5
#86
dependabot[bot]
closed
3 years ago
0
pulling v1.4.6 from master into v1.4.5 mouse support (which is partially complete)
#85
marcmaxson
closed
3 years ago
0
Feature/v1.4.6
#84
marcmaxson
closed
3 years ago
0
Feature/v1.4.4
#83
marcmaxson
closed
3 years ago
0
Feature/v1.4.2 huber debug
#82
marcmaxson
closed
3 years ago
0
Next