issues
search
FoxoTech
/
methylprep
Python-based preprocessing software for Illumina methylation arrays
MIT License
34
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Feature/v1.4.2
#81
marcmaxson
closed
3 years ago
1
Feature/v1.4.2
#80
marcmaxson
closed
3 years ago
0
Feature/v1.4.0 bugs
#79
marcmaxson
closed
3 years ago
0
Feature/v1.4.0 sesame
#78
marcmaxson
closed
3 years ago
0
Feature/v1.4.0 sesame
#77
marcmaxson
closed
3 years ago
0
Feature/v1.3.3
#76
marcmaxson
closed
3 years ago
2
Feature/v1.3.3
#75
marcmaxson
closed
3 years ago
0
bug fix
#74
marcmaxson
closed
3 years ago
0
Feature/v1.3.1
#73
marcmaxson
closed
4 years ago
0
Feature/v1.3.1
#72
marcmaxson
closed
4 years ago
0
retain compressed idat.gz files in pipeline and download
#71
marcmaxson
closed
4 years ago
0
Revert "Allow processing IDAT files without decompression"
#70
marcmaxson
closed
4 years ago
0
offer Apache Arrow output option in methylprep.run_pipeline -- ideal for GPU machine learning use case
#69
marcmaxson
closed
2 years ago
2
Allow processing IDAT files without decompression
#68
adamritter
closed
4 years ago
0
v1.3.0 featuring updated mouse array, vastly improved memory managing, and GEO downloader beta_bakery
#67
marcmaxson
closed
4 years ago
0
Int64 allows NAs while it makes pd.merge more efficient
#66
adamritter
closed
3 years ago
3
Close FTP before unpacking files
#65
adamritter
closed
4 years ago
0
Close tar file before trying to delete it
#64
adamritter
closed
4 years ago
0
Speed up methylation data reading/processing
#63
adamritter
closed
4 years ago
0
run_pipeline(); change default behavior to return None instead of list of data_containers/beta_values to save memory.
#62
marcmaxson
closed
3 years ago
1
Methylprep doesn't process mixed data (EPIC + 450k) sets yet
#61
marcmaxson
closed
3 years ago
3
v1.2.13 - improved read_geo() handles many more types of processed GEO datasets
#60
marcmaxson
closed
4 years ago
0
poobah pkl file is not generated
#59
moranr7
closed
3 years ago
2
methylprep -all - batch-size memory does not clear between batches
#58
marcmaxson
closed
4 years ago
1
methylprep.read_geo exceptions
#57
marcmaxson
opened
4 years ago
0
Dev --> Master (#55)
#56
marcmaxson
closed
4 years ago
0
Dev --> Master
#55
marcmaxson
closed
4 years ago
0
Dev (updating the __version__ part)
#54
marcmaxson
closed
4 years ago
0
Feature/mouse
#53
marcmaxson
closed
4 years ago
0
v1.2.6
#52
marcmaxson
closed
4 years ago
0
save_control only works with single batches
#51
marcmaxson
opened
4 years ago
0
ModuleNotFoundError: No module named 'methylcheck.probes'
#50
moqri
closed
4 years ago
3
readthedocs autodocs autosummary
#49
marcmaxson
closed
4 years ago
0
v1.2.4 unit test fix
#48
marcmaxson
closed
4 years ago
0
v1.2.4 (with --all CLI option and higher-performance file output)
#47
marcmaxson
closed
4 years ago
0
v1.2.3 big fixes
#46
marcmaxson
closed
4 years ago
0
v.1.2.2 minor documentation improvements
#45
marcmaxson
closed
4 years ago
0
Add download command example in the README
#44
haa-gg
closed
4 years ago
1
load_processed function: enable it to create dataframe of betas from processed csvs
#43
marcmaxson
closed
4 years ago
1
v1.2.2 added --save_control CLI option
#42
marcmaxson
closed
4 years ago
0
missing data in manifest files for non-CpG probes; FIX requires users to delete their local manifest files and methylprep will redownload them.
#41
marcmaxson
closed
4 years ago
1
Feature/composite
#40
marcmaxson
closed
4 years ago
0
Feature/composite
#39
marcmaxson
closed
4 years ago
0
v1.2.0 feature/geometa tested and ready to release
#38
marcmaxson
closed
5 years ago
0
Feature/geometa
#37
marcmaxson
closed
5 years ago
0
GEO downloader doesn't handle "TAR (of TXT)" of files, only "TAR (of IDAT)" files.
#36
marcmaxson
closed
4 years ago
1
Minor bug fixes, and coveralls stopped working
#35
marcmaxson
closed
5 years ago
0
Create samplesheet from MINiML file, without processing or downloading
#34
marcmaxson
closed
5 years ago
1
RUVm (postprocessing method to reduce batch effects)
#33
marcmaxson
opened
5 years ago
1
v1.1.9 bug fix
#32
marcmaxson
closed
5 years ago
0
Previous
Next