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FoxoTech
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methylprep
Python-based preprocessing software for Illumina methylation arrays
MIT License
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14
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methylize diff_meth_regions throwing an error
#131
harshaa10
opened
5 months ago
0
Unable to download the latest version of methylsuite v1.7.1
#130
harshaa10
opened
5 months ago
0
Any groups for exchange?
#129
Shahin-rmz
opened
1 year ago
0
methylprep generates only csv files, so methylcheck doesn't work
#128
chrishenan
opened
1 year ago
0
adapted code for pandas2.0
#127
gilgameshjw
opened
1 year ago
8
Bump certifi from 2022.6.15 to 2023.7.22
#126
dependabot[bot]
opened
1 year ago
0
methylprep not working with pandas version >2 due to API changes
#125
ghost
opened
1 year ago
0
Bump scipy from 1.8.0 to 1.10.0
#124
dependabot[bot]
opened
1 year ago
0
Analysing Infinium MethylationEPIC v2.0 Kit already implemented?
#122
claus-h-g
opened
1 year ago
7
Bump requests from 2.27.1 to 2.31.0
#121
dependabot[bot]
opened
1 year ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.3.2
#120
ghost
opened
1 year ago
0
copy number
#119
AntoniaGocke
opened
1 year ago
0
Bump setuptools from 63.1.0 to 65.5.1
#118
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2022.6.15 to 2022.12.7
#117
dependabot[bot]
closed
1 year ago
1
How to control filtering in command line
#116
rowanhowellGE
opened
2 years ago
0
Feature/v1.7.1
#115
marcmaxson
closed
2 years ago
0
Feature/v1.7.0 -- adds parquet support
#114
marcmaxson
closed
2 years ago
2
Bump lxml from 4.7.1 to 4.9.1
#113
dependabot[bot]
closed
2 years ago
0
incorp Mauro's updates (pNegECDF and infer switch) into v1.7.0
#112
marcmaxson
closed
2 years ago
1
correct both addressA and addressB for OOB probes when channel swapping
#111
notmaurox
closed
2 years ago
0
Adapting sample_sheets.py to Windows users
#110
f-marchi
opened
2 years ago
0
Addition of negative control based pvalue calculation
#109
notmaurox
closed
2 years ago
0
Feature/v1.6.3
#108
marcmaxson
closed
2 years ago
1
Update pOOBAH pval calculation
#107
notmaurox
closed
2 years ago
0
custom manifest support
#106
notmaurox
opened
2 years ago
0
minor bug fixes
#105
marcmaxson
closed
2 years ago
1
Control of output file location/names
#104
paulaberry
opened
2 years ago
1
Feature/v1.6.1
#103
marcmaxson
closed
2 years ago
1
Accessing probe intensities for QC metrics
#102
notmaurox
closed
2 years ago
0
Manifest
#101
stefdecondor31
opened
2 years ago
3
CLI does not import the right module
#100
lbeltrame
opened
2 years ago
0
RFE: Allow to specify output directory of methylprep-cli
#99
lbeltrame
opened
2 years ago
0
Feature/v1.6.0
#98
marcmaxson
closed
3 years ago
0
Feature/v1.5.8
#97
marcmaxson
closed
3 years ago
0
Feature/v1.5.7 -- unlocks pandas (v 1.3.0+ supported now)
#96
marcmaxson
closed
3 years ago
0
feature/v1.5.6 and feature/v1.5.5-docs
#95
marcmaxson
closed
3 years ago
0
Feature/v1.5.5 docs
#94
marcmaxson
closed
3 years ago
0
Feature/v1.5.5 docs
#93
marcmaxson
closed
3 years ago
0
Feature/v1.5.5
#92
marcmaxson
closed
3 years ago
0
Feature/v1.5.3
#91
marcmaxson
closed
3 years ago
0
download support TAR of BED files too
#90
marcmaxson
opened
3 years ago
1
Feature/v1.5.2
#89
marcmaxson
closed
3 years ago
0
patch to help read_geo_processed.py detect txt csv files better
#88
marcmaxson
closed
3 years ago
0
Feature/v1.5.0
#87
marcmaxson
closed
3 years ago
0
Bump urllib3 from 1.26.4 to 1.26.5
#86
dependabot[bot]
closed
3 years ago
0
pulling v1.4.6 from master into v1.4.5 mouse support (which is partially complete)
#85
marcmaxson
closed
3 years ago
0
Feature/v1.4.6
#84
marcmaxson
closed
3 years ago
0
Feature/v1.4.4
#83
marcmaxson
closed
3 years ago
0
Feature/v1.4.2 huber debug
#82
marcmaxson
closed
3 years ago
0
Feature/v1.4.2
#81
marcmaxson
closed
3 years ago
1
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