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From Elissa: [In the Phenome Database], you can see some potential mapping, e.g. measurement 1501 has "altered susceptibility to bacterial infection" phenotype (MP) and "response to bacterial infectio…
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In the last ODK release, we switched to ROBOT 1.9.0 which comes with the latest OBO Graphs, which should be entirely immutable with stable serialisation. `jq` should no longer be necessary, we should …
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From AHM on 4/27, @edeutsch asked for information on PMIDs.
How many of our sources are extracting PMID data and are they making it into KG2 edges?
I am looking into it, but also want to check w…
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Term name and definition change request: "Research-specific restriction" to "other research-specific data use category"
Per H3Africa Feedback:
> Original: This secondary category consent code in…
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## Description
This repository (as well as some other ones, maybe?) have commands and scripts that utilize [`robot`](http://robot.obolibrary.org/). The way we typically like to do this would be to wr…
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**Query:** [geneCondition](https://github.com/NCATSTranslator/testing/blob/main/ars-requests/predicates/geneCondition.json)
**PK:** 1b76a57e-d00a-4500-af92-d3b4a0c24475
**ENSEMBL:** ENSG00000133401
…
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Add sparql query `cob-alignment` to ODK, which checks that all `classes` using the ontology BASE namespaces are subsumed under COB. This is a very important issue to push forward.
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https://github.com/obo-behavior/behavior-ontology/blob/master/src/ontology/reports/phenotypes.tsv
Reach out to @rays22 on slack and meet him when he has time, and have him explain to you which term…
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- match current nuclear subtype or mito subtype pattern, results in TSV (DOSDP query)
- delete existing logical definitions
- generate from TSV the new logical definitions with the correct pattern …