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Hello again,
Yesterday I used docker to pull, and try, the latest available build of pggb. While some samples do work, running this one particular sample of ten genomes results in an error which te…
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### Description of the bug
I'm trying to process bulk [Smart3-seq data](https://teichlab.github.io/scg_lib_structs/methods_html/SMART-seq_family.html#SMART-seq3) using the pipeline (related Slack d…
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### Description of the bug
On a number of occasions we have had the situation that the demux pipeline encounters the case where a sample in the sample sheet doesn't get any reads assigned to it, and …
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### Description of bug
Strangely, this error not always happens, not even with the same files individually but with a combination of them. I'm working with numpy v1.26.4 and plotly v5.19.0, and the s…
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Possible alternative for handling JSON structures: https://github.com/ijl/orjson
Could be quite a lot faster and require fewer type hacks.
ewels updated
5 months ago
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Hello Michael,
Thanks for making this R package.
In my multiqc json files for some samples I have NaN for some results. For example a sample had very low amounts of STAR mapping and hence was no…
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### Description of the bug
When you try and run an alphafold2 job (and presumably colabfold as well) using the conda profile, it always errors out with:
`python3: can't open file '/app/alphafold/r…
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### Description of bug
Summary table shows samples a `fail` while the input data has an `EXPECTED_MATCH`
### File that triggers the error
[NVQ_924-WES_H107.crosscheck_metrics.txt](https://github.co…
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### Description of bug
Multiqc v1.18 finds and processes my fastp (version 0.23.4) files successfully, but v1.20 does not. I didn't test v1.19, but I expect a change to the fastp module there trigger…
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### Description of bug
Multiqc (v1.20) does not recognize fastp json files, resulting in a `No analysis results found` and exiting.
```
$ tree QC/logs/json
QC/logs/json
├── sample1.json
└── sam…