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nf-core
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demultiplex
Demultiplexing pipeline for sequencing data
https://nf-co.re/demultiplex
MIT License
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checkqc doesn't run for bclconvert
#226
grst
opened
10 hours ago
2
Add sample two lanes
#225
nschcolnicov
opened
20 hours ago
2
update modules
#224
atrigila
opened
1 day ago
2
Add test profile for samples with more than 1 lane
#223
nschcolnicov
opened
1 day ago
0
Add Illumina Samplesheet Validator
#222
grst
opened
1 day ago
0
add missing params to schema
#221
atrigila
closed
4 days ago
1
Add kraken step aratz
#220
nschcolnicov
opened
4 days ago
3
Make samplesheet be published in outputdir
#219
nschcolnicov
closed
4 days ago
1
Release 1.5.0
#218
apeltzer
opened
5 days ago
1
Update modules
#217
atrigila
closed
4 days ago
3
Update multiqc config
#216
atrigila
closed
6 days ago
1
Copy samplesheet into output directory
#215
grst
closed
4 days ago
2
Remove adapter lines entirely from samplesheet
#214
grst
closed
5 days ago
11
Add trimming docs
#213
nschcolnicov
closed
1 week ago
1
Add additional arguments to mkfastq to test CI
#212
nschcolnicov
closed
1 week ago
1
Review CI tests & Add CI test for mkfastq
#211
nschcolnicov
closed
1 week ago
2
Add option to run checkqc
#210
atrigila
closed
1 week ago
5
Add a section in the documentation dedicated to trimming
#209
nschcolnicov
closed
1 week ago
1
Remove trimming
#208
nschcolnicov
closed
1 week ago
3
Disable automated trimming by demultiplexing tools.
#207
grst
closed
1 week ago
2
Add test with uncompressed data
#206
atrigila
closed
2 weeks ago
1
fix schema format path
#205
atrigila
closed
2 weeks ago
1
Update to latest bcl_demultiplex sub workflow
#204
k1sauce
closed
1 week ago
7
Update bcl_demultiplex sub workflow
#203
k1sauce
closed
2 weeks ago
1
Add demultiplexing subworkflow 10x
#202
nschcolnicov
closed
1 week ago
4
Fix issue 172
#201
atrigila
closed
3 weeks ago
2
UMI handling for DEMUX pipeline
#200
apeltzer
closed
1 week ago
2
List fastq reports for R1 and R2 separately in multiqc report
#199
grst
closed
5 days ago
0
Double Check Documentation is current & up2date with latest nf-core standards
#198
apeltzer
opened
1 month ago
1
Document novel 10X demux subworkflow & testing appropriately
#197
apeltzer
closed
1 week ago
2
Add testcases for 10X runs
#196
apeltzer
closed
1 week ago
2
Add Support for 10X Single Cell Demux
#195
apeltzer
closed
1 week ago
3
Update csv header in usage.md
#194
grst
closed
1 month ago
3
unauthorized issue while downloading
#193
Sungryong-Oh
closed
2 months ago
1
Fix/avoid-falco-to-process-empty-fastq-file
#192
glichtenstein
closed
2 months ago
2
Using uncompressed directory results in validation failure on dev branch
#191
k1sauce
closed
2 weeks ago
1
fix issue #5612 - boolean param to optionally log skipped fastqs
#190
glichtenstein
closed
2 months ago
4
Include test of PE data
#189
k1sauce
closed
5 days ago
2
Include a test with uncompressed flow cell
#188
k1sauce
closed
2 weeks ago
1
fix: closure bug when per flow cell manifest is not included
#187
k1sauce
closed
2 months ago
3
Important! Template update for nf-core/tools v2.14.1
#186
nf-core-bot
closed
2 months ago
2
Important! Template update for nf-core/tools v2.14.0
#185
nf-core-bot
closed
2 months ago
1
Add demultipexing for MGI sequencing machines
#184
ziadbkh
opened
3 months ago
0
Sgalera
#183
sgaleraalq
closed
4 months ago
3
Reads dropped when demultiplexing a sample across lanes.
#182
AaronNHart
opened
4 months ago
0
Individual Multiqc reports per lane / flow cell
#181
jenmuell
closed
4 months ago
1
Escape angle brackets in output.md
#180
k1sauce
closed
2 months ago
1
Important! Template update for nf-core/tools v2.13.1
#179
nf-core-bot
closed
3 months ago
1
Post-release v1.4.1
#178
Aratz
closed
2 months ago
1
Release candidate 1.4.1
#177
Aratz
closed
5 months ago
2
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