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Dear Developers,
Thanks for the recent update, I'm very excited about two-pass search, but I'm experiencing an error reported when I Write sub mzML.
Here is the message:
```
Please wait. …
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I installed FragPipe v22 by unzipping it into a new directory, copied some workflows over from FragPipe v21, and then tried running a DIA_SpecLib_Quant files with MSFragger creating the spectral libra…
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Hi,
I am trying to use ms2Rescore to rescore the output i get from a searchGUi / peptideshaker analysis
here is the log of ms2rescore in debug mode
```
Running DeepLC for PSMs from run (1/1): `5…
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TODOs:
* Change XIC-Extraction to also allow the usage of Bruker data
* Enhance/Expand the conversion steps by not only using Thermo-files, but by also using Bruker-files
* We have to include sep…
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**Submitting author:** @MicroPhen (Stephan Noack)
**Repository:** https://github.com/JuBiotech/peak-performance/
**Branch with paper.md** (empty if default branch): main
**Version:** v0.7.0
**Editor:*…
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Hi,
I am analyzing plant metabolites using LC-QTOF-MS (Agilent 6546), first in DDA mode then will try DIA mode later.
While processing the DDA data in MetaboKit, I am getting the following error i…
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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Hello,
I got an issue during the MSBooster process:
java.lang.NullPointerException
at External.KoinaModelCaller.assignMissingPeptidePredictions(KoinaModelCaller.java:465)
at Fe…
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To my knowledge there currently is no OpenSwath black box tests that include UIS scoring. Would be great if we could have a test for this.
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I am attempting to convert mztab peptide identification from casanovo to .blib format but have been unsuccessful using BlibBuild. The first error I recieved was:
```
(base) kostrouchov@myip:~$ ./B…